Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HSZ52_RS03980 Genome accession   NZ_CP054440
Coordinates   830238..830657 (+) Length   139 a.a.
NCBI ID   WP_011302684.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-058y     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 825238..835657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ52_RS03950 (HSZ52_03950) atpD 825354..826766 (+) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -
  HSZ52_RS03955 (HSZ52_03955) - 826786..827190 (+) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  HSZ52_RS03960 (HSZ52_03960) - 827452..827685 (+) 234 WP_011302682.1 DUF1146 family protein -
  HSZ52_RS03965 (HSZ52_03965) murA 827792..829057 (+) 1266 WP_011302683.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HSZ52_RS03970 (HSZ52_03970) fabZ 829112..829549 (+) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HSZ52_RS03975 (HSZ52_03975) - 829607..830047 (-) 441 WP_002482730.1 YwpF-like family protein -
  HSZ52_RS03980 (HSZ52_03980) ssb 830238..830657 (+) 420 WP_011302684.1 single-stranded DNA-binding protein Machinery gene
  HSZ52_RS03985 (HSZ52_03985) - 831083..831799 (+) 717 WP_061050521.1 transglycosylase family protein -
  HSZ52_RS03990 (HSZ52_03990) tenA 832106..832795 (+) 690 WP_047503194.1 thiaminase II -
  HSZ52_RS03995 (HSZ52_03995) thiD 832788..833609 (+) 822 WP_047503192.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HSZ52_RS04000 (HSZ52_04000) thiM 833602..834393 (+) 792 WP_047503196.1 hydroxyethylthiazole kinase -
  HSZ52_RS04005 (HSZ52_04005) thiE 834393..835031 (+) 639 WP_011302689.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16059.43 Da        Isoelectric Point: 7.7651

>NTDB_id=452521 HSZ52_RS03980 WP_011302684.1 830238..830657(+) (ssb) [Staphylococcus saprophyticus strain UTI-058y]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=452521 HSZ52_RS03980 WP_011302684.1 830238..830657(+) (ssb) [Staphylococcus saprophyticus strain UTI-058y]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597