Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SDSE_RS20275 Genome accession   NC_019042
Coordinates   1977899..1978348 (-) Length   149 a.a.
NCBI ID   WP_003053369.1    Uniprot ID   A0ABU0A4B8
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1972899..1983348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS20255 (S_dysgal_equisimilis_AC2713_2032) - 1972973..1973419 (-) 447 WP_003053378.1 dUTP diphosphatase -
  SDSE_RS20260 (S_dysgal_equisimilis_AC2713_2033) - 1973527..1974294 (-) 768 WP_015058074.1 epoxyqueuosine reductase QueH -
  SDSE_RS20265 (S_dysgal_equisimilis_AC2713_2034) - 1974413..1976197 (-) 1785 WP_015058075.1 ABC transporter ATP-binding protein -
  SDSE_RS20270 (S_dysgal_equisimilis_AC2713_2035) rcrP 1976197..1977906 (-) 1710 WP_003053361.1 ABC transporter ATP-binding protein Regulator
  SDSE_RS20275 (S_dysgal_equisimilis_AC2713_2036) rcrR 1977899..1978348 (-) 450 WP_003053369.1 MarR family transcriptional regulator Regulator
  SDSE_RS20280 (S_dysgal_equisimilis_AC2713_2037) - 1978549..1979565 (+) 1017 WP_015058076.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SDSE_RS20285 (S_dysgal_equisimilis_AC2713_2038) hasC 1979597..1980499 (+) 903 WP_003061497.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  SDSE_RS20290 (S_dysgal_equisimilis_AC2713_2039) - 1980680..1981378 (+) 699 WP_015058077.1 DUF6198 family protein -
  SDSE_RS20295 (S_dysgal_equisimilis_AC2713_2040) - 1981484..1982158 (-) 675 WP_003053389.1 rhomboid family intramembrane serine protease -
  SDSE_RS20300 (S_dysgal_equisimilis_AC2713_2041) - 1982155..1982682 (-) 528 WP_012767579.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17415.30 Da        Isoelectric Point: 9.5972

>NTDB_id=45252 SDSE_RS20275 WP_003053369.1 1977899..1978348(-) (rcrR) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MSRVIADLRELTHQVEQISDEIAKKYDLEHLAGPQGHVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIK
VLPSQVDKRYKQVILAKAGREKLPLLQECRKDIEHYFFKEITREELLTVKKVIQQLKQNMLTYKGENDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=45252 SDSE_RS20275 WP_003053369.1 1977899..1978348(-) (rcrR) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGTCACGAGTAATTGCAGATTTGCGTGAGTTGACACATCAGGTTGAACAAATTAGCGATGAAATTGCAAAGAAGTATGA
CCTTGAACATTTAGCAGGACCCCAGGGACACGTTTTGGTTTTTCTATCCAAGCATCAAGATCAAGAAATTTTTGTGAAGG
ACATTGAAAAAGAACTCCAAATTTCAAAATCAGTTACCAGTAATCTTGTTAAACGCATGGTCAAAAATGGTTTTATTAAG
GTTCTTCCTTCCCAAGTAGACAAGCGCTACAAGCAAGTCATTTTGGCTAAGGCAGGACGAGAGAAACTGCCTTTGTTGCA
AGAATGTCGCAAGGATATTGAACATTATTTCTTTAAAGAAATCACGAGAGAGGAGTTGCTGACGGTTAAAAAGGTGATTC
AGCAGCTTAAGCAAAATATGCTAACTTATAAAGGAGAGAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

45.714

93.96

0.43

Multiple sequence alignment