Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraS   Type   Regulator
Locus tag   HSZ49_RS05015 Genome accession   NZ_CP054438
Coordinates   1042151..1043194 (+) Length   347 a.a.
NCBI ID   WP_011302781.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1037151..1048194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS04975 (HSZ49_04975) - 1037547..1038086 (+) 540 WP_174543865.1 helix-turn-helix domain-containing protein -
  HSZ49_RS13320 - 1038257..1038547 (+) 291 WP_373995835.1 IS3 family transposase -
  HSZ49_RS04985 (HSZ49_04985) - 1038504..1038788 (+) 285 WP_174543866.1 DDE-type integrase/transposase/recombinase -
  HSZ49_RS13325 (HSZ49_04990) - 1038804..1038956 (+) 153 WP_142760159.1 IS3 family transposase -
  HSZ49_RS04995 (HSZ49_04995) - 1039033..1040019 (-) 987 WP_002482841.1 aromatic acid exporter family protein -
  HSZ49_RS05000 (HSZ49_05000) map 1040194..1040946 (+) 753 WP_011302778.1 type I methionyl aminopeptidase -
  HSZ49_RS05005 (HSZ49_05005) - 1041050..1041436 (+) 387 WP_041079966.1 hypothetical protein -
  HSZ49_RS05010 (HSZ49_05010) liaF 1041453..1042154 (+) 702 WP_011302780.1 cell wall-active antibiotics response protein LiaF -
  HSZ49_RS05015 (HSZ49_05015) vraS 1042151..1043194 (+) 1044 WP_011302781.1 sensor histidine kinase Regulator
  HSZ49_RS05020 (HSZ49_05020) vraR 1043184..1043813 (+) 630 WP_002482846.1 response regulator transcription factor Regulator
  HSZ49_RS05025 (HSZ49_05025) - 1043970..1045142 (-) 1173 WP_002482847.1 YihY/virulence factor BrkB family protein -
  HSZ49_RS05030 (HSZ49_05030) - 1045554..1045838 (-) 285 WP_002482848.1 hypothetical protein -
  HSZ49_RS05035 (HSZ49_05035) - 1045845..1046309 (-) 465 WP_174543867.1 low molecular weight protein-tyrosine-phosphatase -
  HSZ49_RS05040 (HSZ49_05040) - 1046444..1046647 (+) 204 WP_002482850.1 DUF1128 family protein -
  HSZ49_RS05045 (HSZ49_05045) - 1046661..1047899 (+) 1239 WP_174543868.1 aminopeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 40050.55 Da        Isoelectric Point: 6.4221

>NTDB_id=452489 HSZ49_RS05015 WP_011302781.1 1042151..1043194(+) (vraS) [Staphylococcus saprophyticus strain UTI-042y]
MNHYFRAIGSMLILVYSTFFAIFFIDKVFVNIMYFQGMFYTQIFGIPVLLFLNLMVILLCIIVGSVLAYKINQQNHWLKD
QIERSIEGQTVGINDQNIELYNETIELYQTLVPLNQEVHKLRMKTQNLTNESYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETELKAPLDQQIPVLEKMIQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVVDLQKKVPMKVVHDI
EEFKVPKGIEDHLFRITQEAISNTLRHSKGTKVTIELFNREEYLLLRIQDNGKGFNVDDKVEQSYGLKNMRERALEIGAT
FHIVSLPDAGTRIEVKAPLNKEDSNAD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=452489 HSZ49_RS05015 WP_011302781.1 1042151..1043194(+) (vraS) [Staphylococcus saprophyticus strain UTI-042y]
ATGAATCACTACTTTAGAGCGATCGGGTCCATGTTGATATTAGTATATAGTACGTTTTTTGCCATATTCTTTATTGATAA
AGTGTTTGTTAATATAATGTATTTTCAAGGTATGTTTTATACTCAAATATTTGGCATACCTGTACTGCTTTTTTTAAATC
TAATGGTGATTTTACTCTGTATTATTGTAGGTTCTGTCTTAGCATATAAAATCAATCAGCAAAATCATTGGTTAAAAGAT
CAAATTGAACGTTCAATAGAAGGTCAAACAGTGGGTATCAATGATCAAAATATTGAATTATACAACGAAACAATCGAACT
ATATCAAACGCTTGTGCCGTTAAATCAAGAAGTACATAAATTAAGAATGAAAACACAGAACCTGACGAATGAATCTTATA
ATATCAATGATGTTAAAGTTAAGAAAATTATAGAAGACGAACGTCAACGTTTAGCGCGTGAATTACATGATTCAGTTAGT
CAACAATTATTCGCAGCAAGTATGATGTTATCAGCAATTAAAGAGACAGAATTGAAGGCCCCATTGGACCAACAAATACC
AGTATTAGAAAAAATGATTCAAGATTCCCAATTAGAAATGAGAGCACTACTATTACACTTAAGACCTATTGGTTTGAAAG
ATAAATCTTTAGGTGAGGGTATTAAAGATTTAGTCGTTGATTTACAGAAAAAAGTACCAATGAAAGTGGTACATGATATT
GAAGAATTCAAAGTACCAAAAGGTATCGAGGACCATTTATTCCGTATTACGCAAGAAGCCATTTCTAATACGCTAAGACA
TTCTAAAGGAACGAAGGTCACAATTGAATTATTTAATAGGGAAGAATATTTGTTATTGCGTATACAAGATAATGGTAAAG
GGTTTAATGTAGATGATAAGGTAGAACAAAGTTATGGATTAAAAAATATGCGCGAACGTGCACTAGAAATAGGTGCAACA
TTTCATATCGTTTCTTTGCCTGATGCAGGTACGAGAATTGAAGTGAAGGCACCATTAAATAAGGAGGATTCAAATGCCGA
TTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(147-210)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(249-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

87.32

100

0.873