Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   HSZ49_RS00450 Genome accession   NZ_CP054438
Coordinates   103507..104856 (-) Length   449 a.a.
NCBI ID   WP_174543746.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 98507..109856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS00425 (HSZ49_00425) - 98560..99063 (-) 504 WP_037539356.1 DUF1643 domain-containing protein -
  HSZ49_RS00430 (HSZ49_00430) - 99078..99389 (-) 312 WP_002506254.1 DUF960 family protein -
  HSZ49_RS00435 (HSZ49_00435) - 99476..99826 (-) 351 WP_002506255.1 SAUGI family uracil-DNA glycosylase inhibitor -
  HSZ49_RS00440 (HSZ49_00440) - 100390..101319 (-) 930 WP_002506256.1 ketopantoate reductase family protein -
  HSZ49_RS00445 (HSZ49_00445) ccrB 101857..103485 (-) 1629 WP_174543745.1 cassette chromosome recombinase CcrB Machinery gene
  HSZ49_RS00450 (HSZ49_00450) ccrA 103507..104856 (-) 1350 WP_174543746.1 cassette chromosome recombinase CcrA Machinery gene
  HSZ49_RS00455 (HSZ49_00455) - 105034..105291 (-) 258 WP_174543747.1 hypothetical protein -
  HSZ49_RS00460 (HSZ49_00460) cch1 105359..107152 (-) 1794 WP_174543748.1 cassette chromosome replicative helicase -
  HSZ49_RS00465 (HSZ49_00465) ssb 107152..107442 (-) 291 WP_113587732.1 cassette chromosome ssDNA-binding protein -
  HSZ49_RS13015 - 107697..108089 (-) 393 WP_258537136.1 hypothetical protein -
  HSZ49_RS13020 - 108196..108609 (-) 414 WP_258537137.1 hypothetical protein -
  HSZ49_RS13025 - 108806..109090 (+) 285 WP_258537138.1 hypothetical protein -
  HSZ49_RS13030 - 109111..109371 (+) 261 WP_258537139.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52058.17 Da        Isoelectric Point: 10.1395

>NTDB_id=452481 HSZ49_RS00450 WP_174543746.1 103507..104856(-) (ccrA) [Staphylococcus saprophyticus strain UTI-042y]
MKQAIGYLRQSTLKQQSLAAQKQTIKALAKKHSIKQITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFMSLAELESDNIGEQVKNGIREKASQGKLITTHAPFGYHYH
NGIFMIDTVKAPTVKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYKNMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKKKIKCPCCGSTLTNITIRKTNHSLRYYVCPKNMNASRFACDFKGINAENLEKQVLET
CQNFFRDQQLYSKIKHAIEKQLKKQKMHNTNNTLTHEKLIEKLAQGTIDVETFREQSQSINLQHKPIQAISDIRIKASLQ
KVIQKSFTLNMLHPYIDEIHITKNKELSGIYLKDEPLNIVNQAVQSSTA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=452481 HSZ49_RS00450 WP_174543746.1 103507..104856(-) (ccrA) [Staphylococcus saprophyticus strain UTI-042y]
ATGAAACAAGCAATAGGTTACTTACGTCAAAGTACACTCAAACAACAATCTCTAGCAGCACAGAAACAGACCATCAAAGC
ACTAGCCAAAAAACACAGTATTAAACAAATCACTTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAGGGACAATGTGACGTATTATGTTGCTATCGTCTGAATCGACTTCATCGTAAC
CTAAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAGTATCATGTTCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATGAGTCTCGCTGAACTTGAATCCGATAATATTGGAGAAC
AAGTTAAAAATGGAATCCGAGAAAAAGCAAGCCAAGGTAAACTAATTACAACGCACGCTCCATTTGGCTATCACTACCAT
AATGGAATATTCATGATAGACACAGTAAAAGCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCACAATACTTAGAAGCTGATGATAAATTCATTAATCGTAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATAAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAACCAACTCAAAAAAAAAATAAA
ATGTCCTTGTTGTGGTTCAACCCTTACCAACATAACCATTAGAAAAACCAATCATTCATTACGTTATTATGTCTGTCCTA
AAAACATGAATGCATCACGTTTTGCATGTGACTTTAAAGGCATAAACGCTGAAAACCTAGAAAAACAGGTCTTAGAAACT
TGCCAAAATTTCTTTCGAGACCAACAGCTCTATTCGAAAATCAAACACGCTATTGAGAAACAGCTCAAAAAACAAAAAAT
GCATAATACTAATAACACATTAACTCATGAAAAGCTCATTGAAAAATTAGCTCAAGGAACAATTGATGTAGAAACATTCA
GAGAACAATCTCAATCGATAAACCTGCAGCATAAACCTATACAAGCAATAAGTGATATTCGGATAAAAGCATCACTACAA
AAAGTTATACAGAAAAGTTTCACGTTAAACATGCTGCATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAACT
AAGCGGCATCTATTTAAAAGATGAGCCACTAAACATTGTTAATCAAGCGGTACAATCATCAACCGCCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

82.55

99.555

0.822
  ccrA Staphylococcus aureus N315

71.269

100

0.713