Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   HSZ49_RS00445 Genome accession   NZ_CP054438
Coordinates   101857..103485 (-) Length   542 a.a.
NCBI ID   WP_174543745.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96857..108485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS00415 (HSZ49_00415) - 97112..98194 (-) 1083 WP_167868017.1 hypothetical protein -
  HSZ49_RS00420 (HSZ49_00420) - 98325..98546 (-) 222 WP_002506252.1 hypothetical protein -
  HSZ49_RS00425 (HSZ49_00425) - 98560..99063 (-) 504 WP_037539356.1 DUF1643 domain-containing protein -
  HSZ49_RS00430 (HSZ49_00430) - 99078..99389 (-) 312 WP_002506254.1 DUF960 family protein -
  HSZ49_RS00435 (HSZ49_00435) - 99476..99826 (-) 351 WP_002506255.1 SAUGI family uracil-DNA glycosylase inhibitor -
  HSZ49_RS00440 (HSZ49_00440) - 100390..101319 (-) 930 WP_002506256.1 ketopantoate reductase family protein -
  HSZ49_RS00445 (HSZ49_00445) ccrB 101857..103485 (-) 1629 WP_174543745.1 cassette chromosome recombinase CcrB Machinery gene
  HSZ49_RS00450 (HSZ49_00450) ccrA 103507..104856 (-) 1350 WP_174543746.1 cassette chromosome recombinase CcrA Machinery gene
  HSZ49_RS00455 (HSZ49_00455) - 105034..105291 (-) 258 WP_174543747.1 hypothetical protein -
  HSZ49_RS00460 (HSZ49_00460) cch1 105359..107152 (-) 1794 WP_174543748.1 cassette chromosome replicative helicase -
  HSZ49_RS00465 (HSZ49_00465) ssb 107152..107442 (-) 291 WP_113587732.1 cassette chromosome ssDNA-binding protein -
  HSZ49_RS13015 - 107697..108089 (-) 393 WP_258537136.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62565.28 Da        Isoelectric Point: 9.3830

>NTDB_id=452480 HSZ49_RS00445 WP_174543745.1 101857..103485(-) (ccrB) [Staphylococcus saprophyticus strain UTI-042y]
MEQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVTDIYADRGISGKSMNRPELQRLLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNTVVADGKHSPIISQELWDKVQARKKQVSEKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLMVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=452480 HSZ49_RS00445 WP_174543745.1 101857..103485(-) (ccrB) [Staphylococcus saprophyticus strain UTI-042y]
ATGGAACAACTCAAACAAAAACGTGTCGGTATTTATGTACGTGTATCAACAGAAATGCAAAGTGCAGAGGGCTATAGTAT
CGACGGGCAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGCCCTGAGCTCCAACGTTTGTTAAAAGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACAAATAGACTCGCACGTAATACATCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCCTGTCTGAGCGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGTTACAAATACTCGCAAGCTTCTCTG
AATTCGAACGCAATAACATTGTCGAGAACGTATTCATGGGTCAAACCAGACGTGCACAAGAAGGCTATTACCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCTAATATCGTCAAATA
TATATTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATGGCTAATGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCTTATATCCTTTCCAATCCCTTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGCCGTAAAGGCCTTAATGATAATACTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTGCATGGTAAAGGAACCA
ATCTATTAACGGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCTGAGGTGATTGAGAAATACGTTATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCTTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAACTCAAG
GCATTATACCTTATGGTCATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.793

100

0.858