Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HTZ88_RS08225 Genome accession   NZ_CP054418
Coordinates   1611963..1612511 (-) Length   182 a.a.
NCBI ID   WP_014974956.1    Uniprot ID   A0AAE6IL22
Organism   Leuconostoc carnosum strain 4010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1606963..1617511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS08205 (HTZ88_08140) dnaB 1607398..1608864 (-) 1467 WP_135197859.1 replicative DNA helicase -
  HTZ88_RS08210 (HTZ88_08145) rplI 1608866..1609318 (-) 453 WP_019040144.1 50S ribosomal protein L9 -
  HTZ88_RS08215 (HTZ88_08150) - 1609370..1611397 (-) 2028 WP_135197860.1 DHH family phosphoesterase -
  HTZ88_RS08220 (HTZ88_08155) rpsR 1611642..1611926 (-) 285 WP_014974955.1 30S ribosomal protein S18 -
  HTZ88_RS08225 (HTZ88_08160) ssb 1611963..1612511 (-) 549 WP_014974956.1 single-stranded DNA-binding protein Machinery gene
  HTZ88_RS08230 (HTZ88_08165) rpsF 1612545..1612841 (-) 297 WP_014974957.1 30S ribosomal protein S6 -
  HTZ88_RS08235 (HTZ88_08170) - 1613028..1614476 (-) 1449 WP_135197861.1 Sapep family Mn(2+)-dependent dipeptidase -
  HTZ88_RS08240 (HTZ88_08175) - 1614531..1615355 (-) 825 WP_305068175.1 energy-coupling factor transporter transmembrane protein EcfT -
  HTZ88_RS08245 (HTZ88_08180) - 1615410..1617104 (-) 1695 WP_135197863.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19751.36 Da        Isoelectric Point: 4.5280

>NTDB_id=452420 HTZ88_RS08225 WP_014974956.1 1611963..1612511(-) (ssb) [Leuconostoc carnosum strain 4010]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKAAENFSNFTGKGALVAVEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSTPSNNGGNFGAPSDNSFSGVDPFASANQNSNSQSTATTQND
APNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=452420 HTZ88_RS08225 WP_014974956.1 1611963..1612511(-) (ssb) [Leuconostoc carnosum strain 4010]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGACGTGGAATTGCGCTATACGCAATCAGGTACAGCTGTTGG
GACATTTAGTCTTGCAGTTAACCGCCAATTTACTAACCAAGCTGGTGAGCGGGAAGCTGACTTTATTAACGCTGTTATCT
GGCGTAAAGCAGCTGAAAATTTCTCGAATTTTACTGGTAAAGGTGCTTTGGTAGCCGTTGAAGGCCGATTGCAAACAAGA
AATTATGAAAATAATCAAGGTCAACGTGTTTACGTTACCGAAGTTGTTGTAGATAATTTCTCATTGCTTGAATCACGCGC
TGAAAGTGAGAAACGTCGTTCACAAAACGGCTCATCAACACCATCTAACAATGGTGGCAACTTTGGTGCACCAAGTGATA
ATTCATTTAGTGGTGTTGATCCATTTGCAAGTGCGAACCAAAATTCAAACTCACAATCGACAGCAACGACACAAAATGAT
GCACCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.516

100

0.659
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.747

100

0.527