Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JBL37_RS23680 Genome accession   NZ_CP065948
Coordinates   5041362..5042036 (-) Length   224 a.a.
NCBI ID   WP_033938756.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAM68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5036362..5047036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL37_RS23650 (JBL37_23655) - 5036536..5037870 (+) 1335 WP_004352308.1 aspartate aminotransferase family protein -
  JBL37_RS23655 (JBL37_23660) - 5037937..5038299 (+) 363 WP_003096551.1 cupin domain-containing protein -
  JBL37_RS23660 (JBL37_23665) rpmG 5038433..5038588 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  JBL37_RS23665 (JBL37_23670) rpmB 5038600..5038836 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  JBL37_RS23670 (JBL37_23675) - 5039191..5040771 (+) 1581 WP_003098288.1 ABC transporter substrate-binding protein -
  JBL37_RS23675 (JBL37_23680) - 5040797..5041345 (+) 549 WP_003098290.1 hypothetical protein -
  JBL37_RS23680 (JBL37_23685) radC 5041362..5042036 (-) 675 WP_033938756.1 DNA repair protein RadC Machinery gene
  JBL37_RS23685 (JBL37_23690) coaBC 5042176..5043384 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  JBL37_RS23690 (JBL37_23695) dut 5043392..5043847 (+) 456 WP_003098293.1 dUTP diphosphatase -
  JBL37_RS23695 (JBL37_23700) - 5043884..5046490 (+) 2607 WP_010793641.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24960.76 Da        Isoelectric Point: 7.2089

>NTDB_id=452389 JBL37_RS23680 WP_033938756.1 5041362..5042036(-) (radC) [Pseudomonas aeruginosa strain PAM68]
MSIRDWPEAERPREKLLEQGVAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVREYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=452389 JBL37_RS23680 WP_033938756.1 5041362..5042036(-) (radC) [Pseudomonas aeruginosa strain PAM68]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGTGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGAATATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.282

93.304

0.46
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.286

100

0.393