Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SDSE_RS19350 Genome accession   NC_019042
Coordinates   1783397..1784431 (-) Length   344 a.a.
NCBI ID   WP_015017341.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778397..1789431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS19315 (S_dysgal_equisimilis_AC2713_1840) - 1779021..1779323 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  SDSE_RS19320 (S_dysgal_equisimilis_AC2713_1841) - 1779316..1779612 (-) 297 WP_003057040.1 YlxR family protein -
  SDSE_RS19325 (S_dysgal_equisimilis_AC2713_1842) nusA 1779628..1780785 (-) 1158 WP_003057051.1 transcription termination factor NusA -
  SDSE_RS19330 (S_dysgal_equisimilis_AC2713_1843) rimP 1780928..1781422 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  SDSE_RS19340 (S_dysgal_equisimilis_AC2713_1844) trmB 1781906..1782541 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SDSE_RS19345 (S_dysgal_equisimilis_AC2713_1845) - 1782541..1783332 (-) 792 WP_003052472.1 phosphotransferase family protein -
  SDSE_RS19350 (S_dysgal_equisimilis_AC2713_1846) pptB 1783397..1784431 (-) 1035 WP_015017341.1 ABC transporter permease Regulator
  SDSE_RS19355 (S_dysgal_equisimilis_AC2713_1847) pptA 1784434..1785159 (-) 726 WP_003057032.1 ABC transporter ATP-binding protein Regulator
  SDSE_RS19360 (S_dysgal_equisimilis_AC2713_1848) - 1785231..1785650 (+) 420 WP_012767493.1 HIT family protein -
  SDSE_RS19365 (S_dysgal_equisimilis_AC2713_1849) - 1785647..1785976 (+) 330 WP_003057072.1 hypothetical protein -
  SDSE_RS19370 (S_dysgal_equisimilis_AC2713_1850) - 1786134..1787402 (-) 1269 WP_015058007.1 LCP family protein -
  SDSE_RS19375 (S_dysgal_equisimilis_AC2713_1851) - 1787414..1787935 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  SDSE_RS19380 (S_dysgal_equisimilis_AC2713_1852) tsaE 1787928..1788371 (-) 444 WP_014612541.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40194.42 Da        Isoelectric Point: 10.2471

>NTDB_id=45238 SDSE_RS19350 WP_015017341.1 1783397..1784431(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRHFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVAVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=45238 SDSE_RS19350 WP_015017341.1 1783397..1784431(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGAAAGCATTATTTCTGAAACGTCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAACGCTCTGCCCTTGTAAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACACTTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGCGGTCATGGGAGTTATTACGCTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(156-327)

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.802

100

0.468
  pptB Streptococcus salivarius strain HSISS4

46.512

100

0.465

Multiple sequence alignment