Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HTY60_RS15805 Genome accession   NZ_CP054415
Coordinates   3051240..3051884 (-) Length   214 a.a.
NCBI ID   WP_013353394.1    Uniprot ID   A0A9P1NIP1
Organism   Bacillus amyloliquefaciens strain 205     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046240..3056884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS15770 (HTY60_15770) - 3047425..3047856 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  HTY60_RS15775 (HTY60_15775) - 3047856..3048197 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  HTY60_RS15780 (HTY60_15780) - 3048190..3049671 (+) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  HTY60_RS15785 (HTY60_15785) - 3049677..3050153 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  HTY60_RS15790 (HTY60_15790) - 3050153..3050437 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  HTY60_RS15795 (HTY60_15795) mnhG 3050421..3050795 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  HTY60_RS15800 (HTY60_15800) - 3050835..3051218 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  HTY60_RS15805 (HTY60_15805) comA 3051240..3051884 (-) 645 WP_013353394.1 response regulator transcription factor Regulator
  HTY60_RS15810 (HTY60_15810) comP 3051965..3054271 (-) 2307 WP_013353395.1 sensor histidine kinase Regulator
  HTY60_RS15815 (HTY60_15815) comX 3054294..3054470 (-) 177 WP_013353396.1 competence pheromone ComX -
  HTY60_RS15820 (HTY60_15820) - 3054489..3055364 (-) 876 WP_013353397.1 polyprenyl synthetase family protein -
  HTY60_RS15825 (HTY60_15825) degQ 3055516..3055656 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  HTY60_RS15830 (HTY60_15830) - 3056121..3056462 (+) 342 WP_013353399.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=452333 HTY60_RS15805 WP_013353394.1 3051240..3051884(-) (comA) [Bacillus amyloliquefaciens strain 205]
MKKILVIDDHPAVMEGTKTMLETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=452333 HTY60_RS15805 WP_013353394.1 3051240..3051884(-) (comA) [Bacillus amyloliquefaciens strain 205]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATGCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855