Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   JAV55_RS14725 Genome accession   NZ_CP065943
Coordinates   2858404..2860176 (-) Length   590 a.a.
NCBI ID   WP_016885566.1    Uniprot ID   -
Organism   Bacillus licheniformis strain H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2853404..2865176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS14705 (JAV55_14705) sdhA 2853586..2855349 (-) 1764 WP_003184180.1 succinate dehydrogenase flavoprotein subunit -
  JAV55_RS14710 (JAV55_14710) - 2855383..2855991 (-) 609 WP_003184182.1 succinate dehydrogenase cytochrome b558 subunit -
  JAV55_RS14715 (JAV55_14715) - 2856293..2856736 (+) 444 WP_003184184.1 YslB family protein -
  JAV55_RS14720 (JAV55_14720) - 2856781..2858010 (-) 1230 WP_003184185.1 aspartate kinase -
  JAV55_RS14725 (JAV55_14725) uvrC 2858404..2860176 (-) 1773 WP_016885566.1 excinuclease ABC subunit UvrC Machinery gene
  JAV55_RS14730 (JAV55_14730) trxA 2860319..2860633 (-) 315 WP_003184189.1 thioredoxin -
  JAV55_RS14735 (JAV55_14735) - 2860846..2861823 (-) 978 WP_003184190.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  JAV55_RS14740 (JAV55_14740) - 2861873..2862646 (-) 774 WP_003184191.1 electron transfer flavoprotein subunit beta/FixA family protein -
  JAV55_RS14745 (JAV55_14745) - 2862678..2863454 (-) 777 WP_003184194.1 enoyl-CoA hydratase -
  JAV55_RS14750 (JAV55_14750) - 2863457..2864059 (-) 603 WP_003184196.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68412.40 Da        Isoelectric Point: 9.4622

>NTDB_id=452178 JAV55_RS14725 WP_016885566.1 2858404..2860176(-) (uvrC) [Bacillus licheniformis strain H2]
MNKKIKEKLALLPDQPGCYLMKDRQDTVIYVGKAKILKNRVRSYFSGSHDAKTQRLVSEIEDFEYIVTSSNIEALILEMN
LIKKYDPKYNVMLKDDKSYPFIKITNERHPKLIVTRKVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCAKLPDRVCL
YYHLGQCLAPCVYDVSEETNRQLTEEITRFLKGGYNEVKKELEAKMLEASENLQFERAKEFRDQIAHIESTMEKQKMMLN
DMVDRDVFAYSYDKGWMCVQVFFIRQGKLIERDVSMFPLYREADEEFLTFIGQFYSKNNHFLPKEILVPDSVDKDMIEEL
LDVNVRQPKRGAKKDLLLLAHKNAKLALKEKFSLIERDEERTIGAIEKLGKALDIYTPYRIEAFDNSNIQGTDPVSAMVV
FLDGKPHKKEYRKYKIKTVEGPDDYGSMREVIRRRYTRVLKENLPLPDLILIDGGKGQVSAALDVLENELGLDVPVAGLV
KDDKHRTSNLLIGDPLEIVQLERNSQEFYLLQRIQDEVHRFAISFHRQLRGKSAFQSVLDGIPGVGEQRKKLLLKHFGSV
KKMKEASAEDIRKLGIPLKTAQLIEEALKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=452178 JAV55_RS14725 WP_016885566.1 2858404..2860176(-) (uvrC) [Bacillus licheniformis strain H2]
ATGAACAAAAAAATCAAAGAAAAGCTGGCCCTTCTTCCGGATCAGCCTGGCTGCTACTTGATGAAAGACAGGCAGGATAC
CGTCATCTACGTCGGGAAAGCGAAAATCTTAAAAAACAGGGTCCGCTCCTATTTCAGCGGGTCCCATGATGCCAAAACAC
AGCGTCTTGTCAGTGAAATTGAAGACTTCGAATACATTGTCACATCCTCGAACATCGAAGCGCTCATTCTTGAAATGAAT
TTAATCAAAAAGTACGACCCGAAATATAACGTGATGCTTAAAGATGATAAAAGCTACCCGTTCATTAAAATCACGAACGA
GCGGCATCCGAAGCTGATTGTCACAAGGAAGGTCAAAAAAGACAAAGGCCGCTATTTCGGGCCGTACCCCAATGTCCAGG
CTGCGAGGGAAACAAAAAAGCTGCTGGACCGCCTCTATCCGCTCAGAAAGTGCGCCAAGCTGCCTGACCGCGTCTGTTTG
TACTATCATCTCGGACAATGTCTGGCGCCATGCGTATATGATGTGTCTGAAGAGACAAACAGACAGCTCACAGAAGAAAT
TACCCGCTTTTTAAAAGGCGGCTACAATGAAGTGAAGAAAGAGCTTGAAGCAAAAATGCTCGAAGCCTCGGAAAACCTGC
AGTTTGAACGGGCGAAAGAATTCCGCGATCAAATTGCCCATATCGAGTCAACGATGGAAAAACAGAAAATGATGCTGAAT
GACATGGTTGACCGCGATGTATTTGCCTATTCGTATGACAAGGGCTGGATGTGCGTCCAGGTCTTCTTCATCAGGCAGGG
CAAATTGATTGAAAGAGATGTCAGCATGTTTCCTTTATACAGGGAAGCAGACGAGGAATTTCTGACATTCATCGGGCAAT
TTTACTCCAAAAACAACCATTTTCTTCCGAAGGAAATTTTGGTGCCTGACAGCGTCGACAAGGACATGATTGAGGAGCTT
TTGGACGTGAACGTGCGCCAGCCGAAAAGAGGAGCGAAAAAAGACCTGCTGCTCCTTGCCCATAAAAATGCAAAGCTCGC
TTTGAAGGAGAAGTTTTCGCTCATTGAACGGGATGAAGAGCGGACGATCGGCGCGATTGAAAAGCTCGGAAAAGCGCTGG
ACATCTACACGCCATACAGAATTGAAGCGTTTGATAACTCAAATATTCAAGGAACGGACCCTGTTTCGGCCATGGTTGTA
TTTCTCGATGGAAAACCGCATAAAAAAGAGTACCGCAAATATAAGATCAAGACGGTTGAAGGTCCTGACGACTACGGATC
AATGCGCGAAGTCATCAGAAGAAGATATACAAGGGTGCTGAAAGAGAATCTGCCGCTGCCTGATTTAATTTTGATCGACG
GCGGAAAGGGGCAGGTGTCTGCCGCCCTTGACGTTCTGGAAAATGAACTGGGTCTCGATGTCCCTGTTGCCGGTCTGGTG
AAAGACGATAAGCACAGAACATCCAACCTTTTGATCGGCGATCCCCTTGAGATCGTCCAGCTTGAGCGGAACAGCCAGGA
ATTTTACCTGCTTCAGCGCATTCAGGACGAAGTGCACAGGTTTGCGATCAGCTTCCACAGGCAGCTCAGGGGAAAAAGCG
CATTTCAATCGGTGCTGGACGGCATACCGGGCGTCGGCGAACAGCGGAAAAAACTGCTGTTAAAACATTTCGGTTCCGTT
AAGAAAATGAAGGAAGCGAGCGCCGAAGATATCCGCAAGCTCGGCATACCTCTGAAAACGGCGCAGCTGATCGAAGAGGC
ATTGAAAAAATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(377-523)

UvrB/uvrC motif (UVR)

(197-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

60.544

99.661

0.603
  uvrC Streptococcus pneumoniae R6

60.204

99.661

0.6
  uvrC Streptococcus pneumoniae D39

60.204

99.661

0.6