Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   MS14413_RS07010 Genome accession   NZ_CP054302
Coordinates   1479440..1480258 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain MS14413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1474440..1485258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS14413_RS06995 (MS14413_01411) pilE 1474657..1475082 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  MS14413_RS07000 (MS14413_01412) pilY2 1475079..1475561 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  MS14413_RS07005 (MS14413_01413) pilY1 1475574..1479428 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  MS14413_RS07010 (MS14413_01414) pilX 1479440..1480258 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MS14413_RS07015 (MS14413_01415) pilW 1480255..1481256 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  MS14413_RS07020 (MS14413_01416) pilV 1481257..1481817 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  MS14413_RS07025 (MS14413_01417) fimU 1481811..1482284 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  MS14413_RS07030 (MS14413_01418) ispH 1482454..1483404 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MS14413_RS07035 (MS14413_01419) gmk 1483527..1484156 (+) 630 WP_000015937.1 guanylate kinase -
  MS14413_RS07040 (MS14413_01420) rpoZ 1484229..1484507 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  MS14413_RS07045 - 1484546..1484675 (+) 130 Protein_1371 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=451904 MS14413_RS07010 WP_000149374.1 1479440..1480258(-) (pilX) [Acinetobacter baumannii strain MS14413]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=451904 MS14413_RS07010 WP_000149374.1 1479440..1480258(-) (pilX) [Acinetobacter baumannii strain MS14413]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993