Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   MS14413_RS06995 Genome accession   NZ_CP054302
Coordinates   1474657..1475082 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain MS14413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469657..1480082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS14413_RS06965 (MS14413_01405) - 1470185..1471219 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  MS14413_RS06970 (MS14413_01406) - 1471334..1472275 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  MS14413_RS06975 (MS14413_01407) rplS 1472328..1472696 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  MS14413_RS06980 (MS14413_01408) trmD 1472905..1473645 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MS14413_RS06985 (MS14413_01409) rimM 1473691..1474239 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  MS14413_RS06990 (MS14413_01410) rpsP 1474259..1474510 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  MS14413_RS06995 (MS14413_01411) pilE 1474657..1475082 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  MS14413_RS07000 (MS14413_01412) pilY2 1475079..1475561 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  MS14413_RS07005 (MS14413_01413) pilY1 1475574..1479428 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=451901 MS14413_RS06995 WP_000788342.1 1474657..1475082(-) (pilE) [Acinetobacter baumannii strain MS14413]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=451901 MS14413_RS06995 WP_000788342.1 1474657..1475082(-) (pilE) [Acinetobacter baumannii strain MS14413]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518