Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BAMTA208_RS12165 Genome accession   NC_017188
Coordinates   2420598..2420933 (+) Length   111 a.a.
NCBI ID   WP_014470659.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2415598..2425933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS12145 (BAMTA208_12630) gcvT 2416202..2417302 (-) 1101 WP_013352857.1 glycine cleavage system aminomethyltransferase GcvT -
  BAMTA208_RS12150 (BAMTA208_12635) - 2417726..2419396 (+) 1671 WP_014470658.1 DEAD/DEAH box helicase -
  BAMTA208_RS12155 (BAMTA208_12640) - 2419417..2420211 (+) 795 WP_013352859.1 YqhG family protein -
  BAMTA208_RS12160 (BAMTA208_12645) sinI 2420391..2420564 (+) 174 WP_013352860.1 anti-repressor SinI Regulator
  BAMTA208_RS12165 (BAMTA208_12650) sinR 2420598..2420933 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  BAMTA208_RS12170 (BAMTA208_12655) tasA 2420981..2421766 (-) 786 WP_013352862.1 biofilm matrix protein TasA -
  BAMTA208_RS12175 (BAMTA208_12660) sipW 2421831..2422415 (-) 585 WP_013352863.1 signal peptidase I SipW -
  BAMTA208_RS12180 (BAMTA208_12665) tapA 2422387..2423058 (-) 672 WP_013352864.1 amyloid fiber anchoring/assembly protein TapA -
  BAMTA208_RS12185 (BAMTA208_12670) - 2423316..2423645 (+) 330 WP_013352865.1 DUF3889 domain-containing protein -
  BAMTA208_RS12190 (BAMTA208_12675) - 2423686..2423865 (-) 180 WP_013352866.1 YqzE family protein -
  BAMTA208_RS12195 (BAMTA208_12680) comGG 2423919..2424296 (-) 378 WP_013352867.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAMTA208_RS12200 (BAMTA208_12685) comGF 2424298..2424798 (-) 501 WP_013352868.1 competence type IV pilus minor pilin ComGF -
  BAMTA208_RS12205 (BAMTA208_12690) comGE 2424707..2425021 (-) 315 WP_014470662.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAMTA208_RS12210 (BAMTA208_12695) comGD 2425005..2425442 (-) 438 WP_013352869.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAMTA208_RS12215 (BAMTA208_12700) comGC 2425432..2425698 (-) 267 WP_044051905.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12986.67 Da        Isoelectric Point: 7.2026

>NTDB_id=45181 BAMTA208_RS12165 WP_014470659.1 2420598..2420933(+) (sinR) [Bacillus amyloliquefaciens TA208]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLEYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=45181 BAMTA208_RS12165 WP_014470659.1 2420598..2420933(+) (sinR) [Bacillus amyloliquefaciens TA208]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACATTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGAATATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

98.198

100

0.982

Multiple sequence alignment