Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BAMTA208_RS11985 Genome accession   NC_017188
Coordinates   2388948..2390678 (-) Length   576 a.a.
NCBI ID   WP_014470652.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2383948..2395678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS11960 (BAMTA208_12435) - 2384506..2384718 (+) 213 WP_014470647.1 spore germination protein -
  BAMTA208_RS11965 (BAMTA208_12440) - 2384843..2385055 (+) 213 WP_013352823.1 spore germination protein -
  BAMTA208_RS11970 (BAMTA208_12445) alr 2385241..2386422 (+) 1182 WP_014470648.1 alanine racemase -
  BAMTA208_RS21385 (BAMTA208_12450) - 2386483..2386617 (+) 135 WP_014470649.1 hypothetical protein -
  BAMTA208_RS11975 (BAMTA208_12455) spo0A 2386612..2387223 (-) 612 WP_014470650.1 sporulation initiation factor Spo0A C-terminal domain-containing protein Regulator
  BAMTA208_RS11980 (BAMTA208_12460) spoIVB 2387504..2388784 (-) 1281 WP_014470651.1 SpoIVB peptidase -
  BAMTA208_RS11985 (BAMTA208_12465) recN 2388948..2390678 (-) 1731 WP_014470652.1 DNA repair protein RecN Machinery gene
  BAMTA208_RS11990 (BAMTA208_12470) ahrC 2390710..2391159 (-) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  BAMTA208_RS11995 (BAMTA208_12475) - 2391256..2392101 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  BAMTA208_RS12000 (BAMTA208_12480) dxs 2392098..2393999 (-) 1902 WP_013352830.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BAMTA208_RS12005 (BAMTA208_12485) - 2394142..2395032 (-) 891 WP_013352831.1 polyprenyl synthetase family protein -
  BAMTA208_RS12010 (BAMTA208_12490) - 2395022..2395276 (-) 255 WP_013352832.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64058.90 Da        Isoelectric Point: 4.7328

>NTDB_id=45179 BAMTA208_RS11985 WP_014470652.1 2388948..2390678(-) (recN) [Bacillus amyloliquefaciens TA208]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLIEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSETVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSADEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTHVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=45179 BAMTA208_RS11985 WP_014470652.1 2388948..2390678(-) (recN) [Bacillus amyloliquefaciens TA208]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATCTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATTGAGGACGACAAGCATTTAGAGCTTTTAGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGTGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCGGCTAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAGAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCTTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAACTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCAACCTTTCAGATGCGCAATTTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGATATTCTGGAATACGGCTCAAAGATAGAAGAGGAAATTGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCCGTGGGCAAAGATGTGGCCGTAGAAGCCGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACGTTTGATACGGAATTTCTTGTG
AAAACCGATCCGTCAGCCGATGAAGCGCCAGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGCATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGTGAGCCTCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAGAGTATTTTTTCTTCTCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
CCCGCAGGTTGCCGCCATGGCGGACACGCACCTTTTGATCGCGAAAGAATTAAAAGACGGCCGGACGACGACGCATGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.889

100

0.889

Multiple sequence alignment