Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BAMTA208_RS11975 Genome accession   NC_017188
Coordinates   2386612..2387223 (-) Length   203 a.a.
NCBI ID   WP_014470650.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2381612..2392223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS11950 (BAMTA208_12415) - 2382105..2382737 (+) 633 WP_013352819.1 helix-turn-helix domain-containing protein -
  BAMTA208_RS21045 (BAMTA208_12425) - 2383030..2383167 (+) 138 WP_014470646.1 hypothetical protein -
  BAMTA208_RS11955 (BAMTA208_12430) - 2383261..2384379 (+) 1119 WP_038463265.1 NADH-dependent flavin oxidoreductase -
  BAMTA208_RS11960 (BAMTA208_12435) - 2384506..2384718 (+) 213 WP_014470647.1 spore germination protein -
  BAMTA208_RS11965 (BAMTA208_12440) - 2384843..2385055 (+) 213 WP_013352823.1 spore germination protein -
  BAMTA208_RS11970 (BAMTA208_12445) alr 2385241..2386422 (+) 1182 WP_014470648.1 alanine racemase -
  BAMTA208_RS21385 (BAMTA208_12450) - 2386483..2386617 (+) 135 WP_014470649.1 hypothetical protein -
  BAMTA208_RS11975 (BAMTA208_12455) spo0A 2386612..2387223 (-) 612 WP_014470650.1 sporulation initiation factor Spo0A C-terminal domain-containing protein Regulator
  BAMTA208_RS11980 (BAMTA208_12460) spoIVB 2387504..2388784 (-) 1281 WP_014470651.1 SpoIVB peptidase -
  BAMTA208_RS11985 (BAMTA208_12465) recN 2388948..2390678 (-) 1731 WP_014470652.1 DNA repair protein RecN Machinery gene
  BAMTA208_RS11990 (BAMTA208_12470) ahrC 2390710..2391159 (-) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  BAMTA208_RS11995 (BAMTA208_12475) - 2391256..2392101 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22590.04 Da        Isoelectric Point: 5.3566

>NTDB_id=45178 BAMTA208_RS11975 WP_014470650.1 2386612..2387223(-) (spo0A) [Bacillus amyloliquefaciens TA208]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVLGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELAKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTKVLYPDIAKKFNTTASRVERAIRHAIEVAW
SRGNIDSISSLFGYTVSMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 612 bp        

>NTDB_id=45178 BAMTA208_RS11975 WP_014470650.1 2386612..2387223(-) (spo0A) [Bacillus amyloliquefaciens TA208]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGCTCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAAAATCCCGATGTGCTCG
TTTTAGACATTATTATGCCGCATCTGGACGGTCTTGCGGTTTTGGAGCGCCTCCGGGAATCAGAACTTGCGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGTGCGTCCTACTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGCAATGTCAGCAGCGTCACAAAAGTCCTTT
ATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGGCCATCCGCCATGCCATTGAAGTTGCATGG
AGCAGGGGAAATATTGACTCCATTTCTTCGCTGTTCGGGTATACTGTGAGCATGACAAAAGCAAAACCAACCAATTCAGA
ATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCATAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(125-196)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.615

64.039

0.606

Multiple sequence alignment