Detailed information NTG0451756

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HRV96_RS20700
• Genome accession: NZ_CP054270
• Coordinates: 4377854..4378651 (+)
• Length: 265 a.a.
• NCBI ID: WP_100663294.1
• Uniprot ID: -
• Organism: Raoultella ornithinolytica strain OHMEATKPC2_NDM5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4372854..4383651

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRV96_RS20665 (HRV96_20600)	gspH	4373007..4373492 (+)	486	WP_233470822.1	type II secretion system minor pseudopilin GspH	-
HRV96_RS20670 (HRV96_20605)	gspI	4373489..4373854 (+)	366	WP_004858044.1	type II secretion system minor pseudopilin GspI	-
HRV96_RS20675 (HRV96_20610)	gspJ	4373866..4374450 (+)	585	WP_015585121.1	type II secretion system minor pseudopilin GspJ	-
HRV96_RS20680 (HRV96_20615)	gspK	4374447..4375433 (+)	987	WP_048024055.1	type II secretion system minor pseudopilin GspK	-
HRV96_RS20685 (HRV96_20620)	gspL	4375420..4376622 (+)	1203	WP_015585123.1	type II secretion system protein GspL	-
HRV96_RS20690 (HRV96_20625)	gspM	4376615..4377109 (+)	495	WP_100663292.1	type II secretion system protein GspM	-
HRV96_RS20695 (HRV96_20630)	-	4377099..4377839 (+)	741	WP_100663293.1	type II secretion system protein N	-
HRV96_RS20700 (HRV96_20635)	pilD	4377854..4378651 (+)	798	WP_100663294.1	A24 family peptidase	Machinery gene
HRV96_RS20705 (HRV96_20640)	hrpB	4378672..4381101 (-)	2430	WP_064359573.1	ATP-dependent helicase HrpB	-
HRV96_RS20710 (HRV96_20645)	thpR	4381174..4381710 (+)	537	WP_004858022.1	RNA 2',3'-cyclic phosphodiesterase	-
HRV96_RS20715 (HRV96_20650)	sfsA	4381710..4382426 (+)	717	WP_004858020.1	DNA/RNA nuclease SfsA	-
HRV96_RS20720 (HRV96_20655)	dksA	4382591..4383046 (+)	456	WP_004858018.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29315.95 Da
• Isoelectric Point: 8.4762

>NTDB_id=451756 HRV96_RS20700 WP_100663294.1 4377854..4378651(+) (pilD) [Raoultella ornithinolytica strain OHMEATKPC2_NDM5]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLAGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSSLFLWTQTL

Nucleotide

• Length: 798 bp

>NTDB_id=451756 HRV96_RS20700 WP_100663294.1 4377854..4378651(+) (pilD) [Raoultella ornithinolytica strain OHMEATKPC2_NDM5]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCACTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GGCCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCAGCCTGTTTCTGTGGACTCAGACGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (122-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.498
pilD	Vibrio campbellii strain DS40M4	46.183	98.868	0.457
pilD	Neisseria gonorrhoeae MS11	46.275	96.226	0.445
pilD	Acinetobacter baumannii D1279779	44.574	97.358	0.434
pilD	Acinetobacter nosocomialis M2	44.186	97.358	0.43