Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HQ939_RS10135 Genome accession   NZ_CP054198
Coordinates   2055761..2056102 (+) Length   113 a.a.
NCBI ID   WP_075606194.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2056202..2056966 2055761..2056102 flank 100


Gene organization within MGE regions


Location: 2055761..2056966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS10135 (HQ939_10145) comEA/comE1 2055761..2056102 (+) 342 WP_075606194.1 ComEA family DNA-binding protein Machinery gene
  HQ939_RS10140 (HQ939_10150) - 2056202..2056966 (-) 765 Protein_1926 IS5 family transposase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12449.30 Da        Isoelectric Point: 9.5399

>NTDB_id=451412 HQ939_RS10135 WP_075606194.1 2055761..2056102(+) (comEA/comE1) [Glaesserella parasuis strain YHP170504]
MKKLSRYTFSLLFGLFSAATFAEEKVTTSTEPTPVVIQQVAATQKVNANVVNINTATASEIQDKLVGIGEKKAQAIMEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=451412 HQ939_RS10135 WP_075606194.1 2055761..2056102(+) (comEA/comE1) [Glaesserella parasuis strain YHP170504]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAGCAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCGGTAGTGATACAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATTA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTGGTCGGTATTGGAGAGAAAAAGGCTCAGGCAATTATGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

94.69

100

0.947
  comE1/comEA Haemophilus influenzae Rd KW20

57.391

100

0.584