Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HQ939_RS03605 Genome accession   NZ_CP054198
Coordinates   650523..651200 (+) Length   225 a.a.
NCBI ID   WP_021112067.1    Uniprot ID   A0AAJ6D9H1
Organism   Glaesserella parasuis strain YHP170504     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 645523..656200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS03590 (HQ939_03595) aroB 645948..647036 (-) 1089 WP_021110495.1 3-dehydroquinate synthase -
  HQ939_RS03595 (HQ939_03600) aroK 647051..647572 (-) 522 WP_015940157.1 shikimate kinase AroK -
  HQ939_RS03600 (HQ939_03605) - 647802..650369 (-) 2568 WP_075606140.1 penicillin-binding protein 1A -
  HQ939_RS03605 (HQ939_03610) comA 650523..651200 (+) 678 WP_021112067.1 hypothetical protein Machinery gene
  HQ939_RS03610 (HQ939_03615) comB 651176..651697 (+) 522 WP_021112068.1 hypothetical protein Machinery gene
  HQ939_RS03615 (HQ939_03620) comC 651694..652224 (+) 531 WP_075606141.1 ATPase Machinery gene
  HQ939_RS03620 (HQ939_03625) comD 652269..652610 (+) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  HQ939_RS03625 (HQ939_03630) comE 652620..653882 (+) 1263 WP_075604702.1 type IV pilus secretin PilQ Machinery gene
  HQ939_RS03630 (HQ939_03635) nusB 653961..654374 (+) 414 WP_021112072.1 transcription antitermination factor NusB -
  HQ939_RS03635 (HQ939_03640) thiL 654383..655351 (+) 969 WP_021112073.1 thiamine-phosphate kinase -
  HQ939_RS03640 (HQ939_03645) - 655354..655824 (+) 471 WP_021117942.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26267.32 Da        Isoelectric Point: 7.3026

>NTDB_id=451395 HQ939_RS03605 WP_021112067.1 650523..651200(+) (comA) [Glaesserella parasuis strain YHP170504]
MGKFFQFRITPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYHITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKMTETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHLPHFYPYLIALGASLWNGKASI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=451395 HQ939_RS03605 WP_021112067.1 650523..651200(+) (comA) [Glaesserella parasuis strain YHP170504]
ATGGGTAAATTCTTTCAATTTCGTATAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAGCAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATTTGGCGAAAAACCTTGATACTGCCGGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCACATTACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCTCTAAGAAAAAGCAACAGCTTTG
ACCCAACAGCTATTTTAGATTGCGAACTCTACTGCCTGCTACGAGCGGTAGGATTTCTGACAAAAATGACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACATCTTCCCCACTTTTATCCTTATCTCATTGCAT
TAGGAGCAAGTTTATGGAATGGCAAGGCATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

99.556

100

0.996