Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   HQ939_RS03620 Genome accession   NZ_CP054198
Coordinates   652269..652610 (+) Length   113 a.a.
NCBI ID   WP_021114623.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 647269..657610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS03600 (HQ939_03605) - 647802..650369 (-) 2568 WP_075606140.1 penicillin-binding protein 1A -
  HQ939_RS03605 (HQ939_03610) comA 650523..651200 (+) 678 WP_021112067.1 hypothetical protein Machinery gene
  HQ939_RS03610 (HQ939_03615) comB 651176..651697 (+) 522 WP_021112068.1 hypothetical protein Machinery gene
  HQ939_RS03615 (HQ939_03620) comC 651694..652224 (+) 531 WP_075606141.1 ATPase Machinery gene
  HQ939_RS03620 (HQ939_03625) comD 652269..652610 (+) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  HQ939_RS03625 (HQ939_03630) comE 652620..653882 (+) 1263 WP_075604702.1 type IV pilus secretin PilQ Machinery gene
  HQ939_RS03630 (HQ939_03635) nusB 653961..654374 (+) 414 WP_021112072.1 transcription antitermination factor NusB -
  HQ939_RS03635 (HQ939_03640) thiL 654383..655351 (+) 969 WP_021112073.1 thiamine-phosphate kinase -
  HQ939_RS03640 (HQ939_03645) - 655354..655824 (+) 471 WP_021117942.1 phosphatidylglycerophosphatase A -
  HQ939_RS03645 (HQ939_03650) - 655826..656455 (+) 630 WP_015940164.1 LysE family transporter -
  HQ939_RS03650 (HQ939_03655) trxA 656752..657066 (+) 315 WP_015940165.1 thioredoxin -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13165.91 Da        Isoelectric Point: 4.8436

>NTDB_id=451398 HQ939_RS03620 WP_021114623.1 652269..652610(+) (comD) [Glaesserella parasuis strain YHP170504]
MADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=451398 HQ939_RS03620 WP_021114623.1 652269..652610(+) (comD) [Glaesserella parasuis strain YHP170504]
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTG
TATGCCAACGGACAAGGTGAATGAAATTAATCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ATGATAAAATCCGAGCCATTTTTTTAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

98.23

100

0.982