Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   HQ939_RS02880 Genome accession   NZ_CP054198
Coordinates   496174..496755 (-) Length   193 a.a.
NCBI ID   WP_021110392.1    Uniprot ID   A0A084ELH5
Organism   Glaesserella parasuis strain YHP170504     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 491174..501755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS02840 (HQ939_02845) - 491522..492160 (+) 639 WP_005710397.1 nitroreductase family protein -
  HQ939_RS02845 (HQ939_02850) - 492249..492782 (+) 534 WP_010786060.1 TIGR00645 family protein -
  HQ939_RS02850 (HQ939_02855) - 492867..494165 (-) 1299 WP_021118667.1 NAD(P)/FAD-dependent oxidoreductase -
  HQ939_RS02870 (HQ939_02875) greB 494699..495178 (-) 480 WP_071610788.1 transcription elongation factor GreB -
  HQ939_RS02875 (HQ939_02880) - 495178..496113 (-) 936 WP_005710401.1 KpsF/GutQ family sugar-phosphate isomerase -
  HQ939_RS02880 (HQ939_02885) pilF 496174..496755 (-) 582 WP_021110392.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  HQ939_RS02885 (HQ939_02890) - 496907..498067 (-) 1161 WP_010786053.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  HQ939_RS12335 - 498268..498576 (-) 309 WP_021117805.1 helix-turn-helix domain-containing protein -
  HQ939_RS12340 - 498580..498918 (-) 339 WP_021117806.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HQ939_RS02915 (HQ939_02920) gltX 499757..501196 (+) 1440 WP_071610789.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22339.24 Da        Isoelectric Point: 8.0872

>NTDB_id=451393 HQ939_RS02880 WP_021110392.1 496174..496755(-) (pilF) [Glaesserella parasuis strain YHP170504]
MTFAKFFRNLTACSVALWLVACANQTTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY
YQQTGDNQKAEEAYQQALKLSKTQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN
MKKDIEKQKTALSQLEKIDKSRAERLYNFMEIR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=451393 HQ939_RS02880 WP_021110392.1 496174..496755(-) (pilF) [Glaesserella parasuis strain YHP170504]
ATGACCTTTGCAAAATTTTTCCGTAATTTGACCGCTTGTAGCGTGGCATTATGGCTTGTTGCTTGTGCGAACCAAACTAC
TCAGGTGGATTTTAACCGCTCGGAAGCCGTCAAAGCTCGCATTAATTTGGCCCTTGCTTACCTTGAACAATCTGATTTTC
CAAAAGCGAAAGAAAACATTGACAAAGCGCTTGAACACGATGTAAAAGACTACCTACCGCACTCTGTGCTTGCCTATTAT
TACCAACAAACTGGCGATAACCAAAAAGCAGAAGAAGCCTACCAGCAAGCCTTGAAGTTAAGTAAAACACAGAGCAAAAA
CAATCAAGTTCGCCCTGATGTATTGAATAACTACGGTACCTTTCTGTGCAAACAAAAACAGTTCGACAAAGCCTATCAGC
AATTTGAAACGGCATTAACCAGTCAAGAAGCCTATTATAATCAAGCAGATACACTAGAAAATATCGCCTTATGTGCCAAT
ATGAAGAAGGATATTGAGAAGCAAAAAACAGCACTATCTCAACTTGAGAAAATAGATAAATCAAGAGCAGAACGACTATA
TAATTTCATGGAGATTAGATAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_2)

(74-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084ELH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

99.482

100

0.995
  pilF/pilF2 Haemophilus influenzae Rd KW20

44.693

92.746

0.415