Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HR084_RS15980 Genome accession   NZ_CP054177
Coordinates   3125263..3125907 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3120263..3130907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS15945 (HR084_15945) mrpB 3121453..3121884 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  HR084_RS15950 (HR084_15950) mrpC 3121884..3122225 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  HR084_RS15955 (HR084_15955) mrpD 3122218..3123699 (+) 1482 WP_173614276.1 Na+/H+ antiporter subunit D -
  HR084_RS15960 (HR084_15960) mrpE 3123705..3124181 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  HR084_RS15965 (HR084_15965) mrpF 3124181..3124465 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  HR084_RS15970 (HR084_15970) mnhG 3124449..3124823 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  HR084_RS15975 (HR084_15975) yuxO 3124864..3125244 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  HR084_RS15980 (HR084_15980) comA 3125263..3125907 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  HR084_RS15985 (HR084_15985) comP 3125988..3128297 (-) 2310 Protein_3108 two-component system sensor histidine kinase ComP -
  HR084_RS15990 (HR084_15990) comX 3128312..3128479 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  HR084_RS15995 (HR084_15995) comQ 3128467..3129366 (-) 900 WP_173614277.1 ComX modifying isoprenyl transferase ComQ Regulator
  HR084_RS16000 (HR084_16000) degQ 3129551..3129691 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  HR084_RS16005 (HR084_16005) - 3129913..3130038 (+) 126 WP_003228793.1 hypothetical protein -
  HR084_RS16010 (HR084_16010) - 3130152..3130520 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=451351 HR084_RS15980 WP_003220716.1 3125263..3125907(-) (comA) [Bacillus subtilis strain JCL16]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=451351 HR084_RS15980 WP_003220716.1 3125263..3125907(-) (comA) [Bacillus subtilis strain JCL16]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1