Detailed information NTG0451326

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: STRR_RS09495
• Genome accession: NZ_CP065788
• Coordinates: 1823594..1824694 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain RR
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1818594..1829694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STRR_RS09470 (STRR_09440)	pgsA	1819136..1819678 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
STRR_RS09475 (STRR_09445)	-	1819691..1820548 (-)	858	WP_014608803.1	helix-turn-helix transcriptional regulator	-
STRR_RS09480 (STRR_09450)	yfmH	1820607..1821884 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
STRR_RS09485 (STRR_09455)	yfmF	1821886..1823136 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
STRR_RS09490 (STRR_09460)	yaaA	1823214..1823591 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
STRR_RS09495 (STRR_09465)	recF	1823594..1824694 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
STRR_RS09500 (STRR_09470)	guaB	1824863..1826344 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
STRR_RS09505 (STRR_09475)	trpS	1826521..1827543 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
STRR_RS09510 (STRR_09480)	-	1827971..1828843 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=451326 STRR_RS09495 WP_002947786.1 1823594..1824694(+) (recF) [Streptococcus thermophilus strain RR]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=451326 STRR_RS09495 WP_002947786.1 1823594..1824694(+) (recF) [Streptococcus thermophilus strain RR]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432