Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HR084_RS11165 Genome accession   NZ_CP054177
Coordinates   2233183..2233803 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228183..2238803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS11125 (HR084_11125) ptsA 2229317..2229823 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  HR084_RS11130 (HR084_11130) ypqA 2229961..2230380 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  HR084_RS11135 (HR084_11135) sppG 2230401..2230778 (-) 378 WP_004398696.1 YppG family protein -
  HR084_RS11140 (HR084_11140) yppF 2230965..2231153 (+) 189 WP_003230690.1 YppF family protein -
  HR084_RS11145 (HR084_11145) yppE 2231192..2231563 (-) 372 WP_003246080.1 YppE family protein -
  HR084_RS11150 (HR084_11150) yppD 2231609..2231854 (-) 246 WP_004398488.1 YppD family protein -
  HR084_RS11155 (HR084_11155) sspM 2232051..2232155 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  HR084_RS11160 (HR084_11160) yppC 2232180..2233142 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  HR084_RS11165 (HR084_11165) recU 2233183..2233803 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  HR084_RS11170 (HR084_11170) ponA 2233825..2236584 (+) 2760 WP_038429203.1 PBP1A family penicillin-binding protein -
  HR084_RS11175 (HR084_11175) ypoC 2236660..2237154 (-) 495 WP_009967579.1 YpoC family protein -
  HR084_RS11180 (HR084_11180) nth 2237151..2237810 (-) 660 WP_009967580.1 endonuclease III -
  HR084_RS11185 (HR084_11185) dnaD 2237829..2238527 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=451326 HR084_RS11165 WP_004399067.1 2233183..2233803(+) (recU) [Bacillus subtilis strain JCL16]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=451326 HR084_RS11165 WP_004399067.1 2233183..2233803(+) (recU) [Bacillus subtilis strain JCL16]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1