Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HQN60_RS07635 Genome accession   NZ_CP054143
Coordinates   1586712..1588079 (+) Length   455 a.a.
NCBI ID   WP_173533090.1    Uniprot ID   A0A6M8ST60
Organism   Deefgea piscis strain D17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581712..1593079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN60_RS07615 (HQN60_07615) ttcA 1582697..1583638 (+) 942 WP_217390293.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  HQN60_RS07620 (HQN60_07620) - 1583635..1584426 (+) 792 WP_173533087.1 fused MFS/spermidine synthase -
  HQN60_RS07625 (HQN60_07625) - 1584596..1585090 (+) 495 WP_173533088.1 RNA pyrophosphohydrolase -
  HQN60_RS07630 (HQN60_07630) - 1585142..1586728 (+) 1587 WP_173533089.1 PAS domain-containing sensor histidine kinase -
  HQN60_RS07635 (HQN60_07635) pilR 1586712..1588079 (+) 1368 WP_173533090.1 sigma-54 dependent transcriptional regulator Regulator
  HQN60_RS07640 (HQN60_07640) ampD 1588126..1588719 (+) 594 WP_173534641.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HQN60_RS07645 (HQN60_07645) - 1588822..1590714 (+) 1893 WP_173533091.1 potassium transporter Kup -
  HQN60_RS07650 (HQN60_07650) - 1590788..1591408 (-) 621 WP_173533092.1 pyrimidine 5'-nucleotidase -
  HQN60_RS07655 (HQN60_07655) - 1591472..1591903 (-) 432 WP_173533093.1 CBS domain-containing protein -
  HQN60_RS07660 (HQN60_07660) argB 1592011..1592889 (-) 879 WP_173533094.1 acetylglutamate kinase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49932.52 Da        Isoelectric Point: 5.5610

>NTDB_id=451115 HQN60_RS07635 WP_173533090.1 1586712..1588079(+) (pilR) [Deefgea piscis strain D17]
MAKKSKVLPRVLVVDDEPDLADLLELTLLKMGLAVETANGVIAAKALIDKQHFDLCLTDMRMPDGEGLDLVRYIQSKGLD
LPIAVITAYGNTENAVAALKAGAFDYLAKPVALEQLRALVKSALKIEATPAVKAARRDRPLLGDSPALQHALVLIEKLAR
NQAPVYVTGESGSGKERAARTIHSCSSRADQPFIAVNCGAIPENLMESEFFGYRKGAFTGAQEDREGFFQAAHGGTLFLD
EVADLPLLMQVKLLRAIQERKVRKVGGVQEEDVDVRIISATHQNLSRCVEAGRFRQDLYYRLNVIELKMPALREMGNDVL
LIAQFLVEDIAARHGMPVLAFTAAAKDALCRYDFPGNVRELENLLERAMALADGQQIDIDDLQLQHASGDKAEAVAANLG
DTYPLQDYLDRVEKVAIIAALDKTGFNRTQAAKLLGVTFRSLRYRLERLGITQDE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=451115 HQN60_RS07635 WP_173533090.1 1586712..1588079(+) (pilR) [Deefgea piscis strain D17]
ATGGCGAAAAAATCTAAAGTATTACCCCGAGTTTTGGTGGTGGATGATGAGCCTGATTTGGCCGATTTACTCGAATTAAC
TTTGCTCAAAATGGGGCTGGCGGTTGAAACCGCCAATGGGGTGATTGCCGCGAAAGCTTTGATTGATAAGCAGCATTTTG
ATTTGTGTTTAACCGATATGCGTATGCCCGATGGTGAGGGCTTGGATCTAGTTCGGTATATCCAAAGTAAAGGTTTAGAT
TTACCGATTGCGGTGATTACGGCATATGGCAATACCGAGAATGCCGTAGCGGCACTAAAAGCGGGCGCGTTTGATTATCT
GGCCAAGCCCGTGGCGTTGGAGCAATTGCGGGCTTTAGTCAAATCGGCACTGAAAATTGAAGCTACGCCAGCGGTAAAAG
CCGCGCGACGAGATCGTCCGTTGTTGGGCGATTCGCCAGCTTTGCAACACGCTTTGGTGTTAATTGAAAAACTAGCGCGC
AATCAAGCGCCTGTGTATGTCACCGGAGAATCGGGCTCGGGTAAAGAGCGGGCGGCGCGAACGATTCATAGCTGTTCTAG
CCGTGCGGATCAGCCATTTATTGCGGTGAACTGTGGTGCGATTCCAGAAAACTTAATGGAAAGTGAGTTTTTTGGTTACC
GCAAAGGGGCATTTACCGGCGCGCAAGAAGATCGCGAAGGTTTTTTTCAAGCCGCGCATGGCGGTACGCTATTTTTGGAT
GAAGTTGCCGATTTGCCCTTGCTGATGCAAGTTAAATTGCTGCGCGCCATTCAAGAGCGCAAAGTACGCAAAGTGGGCGG
CGTGCAAGAAGAAGACGTGGATGTGCGGATTATTTCGGCAACGCATCAAAATCTATCCCGCTGCGTTGAGGCTGGGCGTT
TTCGACAAGATTTGTATTATCGATTGAATGTGATCGAGCTGAAAATGCCGGCGCTGCGCGAAATGGGCAACGATGTACTA
TTAATCGCTCAGTTTTTGGTCGAAGACATCGCCGCGCGACATGGTATGCCGGTATTGGCTTTTACCGCGGCTGCTAAAGA
TGCGTTATGTCGTTATGATTTTCCTGGCAATGTGCGTGAATTAGAAAACCTACTTGAGCGCGCAATGGCTTTGGCCGATG
GCCAGCAGATCGATATTGATGATCTGCAATTGCAGCATGCCTCTGGTGACAAAGCCGAAGCGGTTGCGGCCAATTTAGGC
GACACCTATCCATTGCAAGATTATCTGGACCGAGTCGAAAAAGTCGCCATTATCGCCGCTTTGGATAAAACCGGCTTTAA
TCGAACGCAGGCCGCTAAACTACTCGGTGTGACCTTTCGTAGTTTGCGCTATCGCTTAGAAAGATTGGGAATTACGCAAG
ATGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(409-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8ST60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.787

97.143

0.552
  pilR Acinetobacter baumannii strain A118

47.939

100

0.486