Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HQN60_RS06725 Genome accession   NZ_CP054143
Coordinates   1382641..1383024 (+) Length   127 a.a.
NCBI ID   WP_173532918.1    Uniprot ID   -
Organism   Deefgea piscis strain D17     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1377641..1388024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN60_RS06705 (HQN60_06705) ccsB 1377709..1378836 (-) 1128 WP_173532914.1 c-type cytochrome biogenesis protein CcsB -
  HQN60_RS06710 (HQN60_06710) - 1378847..1380880 (-) 2034 WP_173532915.1 cytochrome c biogenesis protein ResB -
  HQN60_RS06715 (HQN60_06715) - 1380947..1381561 (-) 615 WP_173532916.1 cytochrome c -
  HQN60_RS06720 (HQN60_06720) yihA 1381670..1382308 (+) 639 WP_173532917.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  HQN60_RS06725 (HQN60_06725) pilG 1382641..1383024 (+) 384 WP_173532918.1 twitching motility response regulator PilG Regulator
  HQN60_RS06730 (HQN60_06730) - 1383050..1383412 (+) 363 WP_173532919.1 PleD family two-component system response regulator -
  HQN60_RS06735 (HQN60_06735) - 1383436..1383963 (+) 528 WP_173532920.1 chemotaxis protein CheW -
  HQN60_RS06740 (HQN60_06740) - 1384002..1386185 (+) 2184 WP_254456691.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13773.91 Da        Isoelectric Point: 6.2865

>NTDB_id=451113 HQN60_RS06725 WP_173532918.1 1382641..1383024(+) (pilG) [Deefgea piscis strain D17]
MSSLAGIKVMVIDDSNTIRRSAEIFLGQAGCTVILAEDGFDALAKITDNNPDVIFVDVMMPRLDGYQTCALIKKNPRFKS
TPVVMLSSKDGLFDRARGRMVGSDEYLTKPFTKDSLLAAVGTYSSAT

Nucleotide


Download         Length: 384 bp        

>NTDB_id=451113 HQN60_RS06725 WP_173532918.1 1382641..1383024(+) (pilG) [Deefgea piscis strain D17]
ATGTCTAGTCTTGCTGGTATTAAGGTCATGGTTATCGATGACAGCAATACGATTCGACGCAGTGCTGAAATCTTTTTGGG
GCAAGCAGGTTGCACTGTTATTTTGGCTGAAGATGGGTTTGATGCTTTAGCAAAAATTACAGACAACAATCCGGATGTCA
TCTTTGTTGACGTCATGATGCCACGCTTAGATGGTTATCAAACTTGCGCCTTAATTAAAAAAAATCCGCGTTTTAAATCA
ACCCCTGTCGTGATGCTGTCGTCAAAAGATGGTTTATTTGATCGAGCGCGCGGCCGCATGGTGGGATCTGATGAGTATTT
AACCAAGCCATTTACCAAAGACAGCCTATTGGCTGCTGTAGGCACTTACTCAAGCGCAACTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

64.516

97.638

0.63
  vicR Streptococcus mutans UA159

38.333

94.488

0.362