Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   I6G22_RS13395 Genome accession   NZ_CP065737
Coordinates   1975172..1976167 (+) Length   331 a.a.
NCBI ID   WP_371400349.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970172..1981167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS10520 (I6G22_10525) rpsA 1971131..1972357 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  I6G22_RS10525 (I6G22_10530) - 1972508..1973224 (+) 717 WP_023189630.1 nucleoside phosphorylase -
  I6G22_RS10530 (I6G22_10535) pnuC 1973353..1974066 (+) 714 WP_012897492.1 nicotinamide riboside transporter PnuC -
  I6G22_RS13390 uvrC 1974161..1975123 (+) 963 Protein_1970 excinuclease ABC subunit UvrC -
  I6G22_RS13395 uvrC 1975172..1976167 (+) 996 WP_371400349.1 hypothetical protein Machinery gene
  I6G22_RS10540 (I6G22_10545) mutY 1976331..1977494 (+) 1164 WP_023189627.1 A/G-specific adenine glycosylase -
  I6G22_RS10545 (I6G22_10550) pepV 1977560..1978978 (+) 1419 WP_003132599.1 dipeptidase PepV -
  I6G22_RS10550 (I6G22_10555) acpS 1979081..1979440 (+) 360 WP_021468491.1 holo-ACP synthase -
  I6G22_RS10555 (I6G22_10560) alr 1979485..1980588 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36971.73 Da        Isoelectric Point: 10.1706

>NTDB_id=451070 I6G22_RS13395 WP_371400349.1 1975172..1976167(+) (uvrC) [Lactococcus lactis strain FDAARGOS_865]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAGIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=451070 I6G22_RS13395 WP_371400349.1 1975172..1976167(+) (uvrC) [Lactococcus lactis strain FDAARGOS_865]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACGACTAAAGCAGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAGTCATTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCTGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCACGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGGGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGACC
CTTTAGATGTAGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
GCATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae D39

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae TIGR4

70.741

81.571

0.577