Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6G22_RS13305 Genome accession   NZ_CP065737
Coordinates   2443923..2444057 (+) Length   44 a.a.
NCBI ID   WP_023189240.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2438923..2449057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS12710 (I6G22_12715) - 2438962..2439441 (+) 480 WP_023189234.1 nucleoside 2-deoxyribosyltransferase -
  I6G22_RS12715 (I6G22_12720) - 2439506..2440558 (+) 1053 WP_023189235.1 BMP family lipoprotein -
  I6G22_RS12720 (I6G22_12725) - 2440738..2441661 (+) 924 WP_023189236.1 FAD:protein FMN transferase -
  I6G22_RS12725 (I6G22_12730) - 2441677..2442282 (+) 606 WP_025017080.1 NADPH-dependent FMN reductase -
  I6G22_RS12730 (I6G22_12735) - 2442336..2443547 (+) 1212 WP_023189238.1 NAD(P)H-dependent oxidoreductase -
  I6G22_RS13305 recA 2443923..2444057 (+) 135 WP_023189240.1 RecA protein Machinery gene
  I6G22_RS13310 recA 2444131..2444436 (+) 306 WP_023189241.1 RecA protein Machinery gene
  I6G22_RS13365 recA 2444460..2444612 (+) 153 WP_332297123.1 hypothetical protein Machinery gene
  I6G22_RS12740 (I6G22_12745) - 2444872..2445363 (+) 492 WP_023189242.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6G22_RS12745 (I6G22_12750) - 2445360..2446151 (+) 792 WP_025017078.1 hypothetical protein -
  I6G22_RS12750 (I6G22_12755) - 2446631..2447032 (-) 402 WP_023189244.1 MerR family transcriptional regulator -
  I6G22_RS12755 (I6G22_12760) - 2447248..2447721 (+) 474 WP_025017077.1 flavodoxin family protein -
  I6G22_RS12760 (I6G22_12765) - 2447738..2448595 (+) 858 WP_025017076.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 44 a.a.        Molecular weight: 5012.68 Da        Isoelectric Point: 3.8103

>NTDB_id=451065 I6G22_RS13305 WP_023189240.1 2443923..2444057(+) (recA) [Lactococcus lactis strain FDAARGOS_865]
MLTPDTEYTEDIGVKSESLIFAQPDTGEEAFYMINEFVKRGLLI

Nucleotide


Download         Length: 135 bp        

>NTDB_id=451065 I6G22_RS13305 WP_023189240.1 2443923..2444057(+) (recA) [Lactococcus lactis strain FDAARGOS_865]
GTGCTGACACCTGATACTGAATATACTGAAGATATTGGGGTAAAATCAGAAAGTTTGATATTTGCTCAACCAGATACAGG
CGAAGAAGCCTTTTATATGATAAACGAGTTTGTAAAAAGAGGGCTTTTGATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

43.243

84.091

0.364
  recA Neisseria gonorrhoeae strain FA1090

43.243

84.091

0.364