Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   HRJ47_RS18300 Genome accession   NZ_CP054137
Coordinates   3761198..3762352 (+) Length   384 a.a.
NCBI ID   WP_086398781.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3756198..3767352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS18275 (HRJ47_18265) - 3756347..3757561 (+) 1215 WP_086398778.1 oxygenase MpaB family protein -
  HRJ47_RS18280 (HRJ47_18270) - 3757629..3757835 (-) 207 WP_086398779.1 hypothetical protein -
  HRJ47_RS18285 (HRJ47_18275) oprC 3757889..3760003 (-) 2115 WP_086398780.1 TonB-dependent copper receptor -
  HRJ47_RS18290 (HRJ47_18280) - 3760076..3760501 (-) 426 WP_002114087.1 DUF2946 family protein -
  HRJ47_RS18295 (HRJ47_18285) def 3760545..3761075 (-) 531 WP_032055797.1 peptide deformylase -
  HRJ47_RS18300 (HRJ47_18290) tsaP 3761198..3762352 (+) 1155 WP_086398781.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HRJ47_RS18305 (HRJ47_18295) dprA 3762373..3763506 (+) 1134 WP_086398859.1 DNA-processing protein DprA Machinery gene
  HRJ47_RS18310 (HRJ47_18300) yrdC 3763558..3764127 (+) 570 WP_086398782.1 L-threonylcarbamoyladenylate synthase -
  HRJ47_RS18315 (HRJ47_18305) - 3764520..3765440 (-) 921 WP_203079969.1 DMT family transporter -
  HRJ47_RS18320 (HRJ47_18310) - 3765545..3766198 (-) 654 WP_079377716.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42711.63 Da        Isoelectric Point: 7.2978

>NTDB_id=451065 HRJ47_RS18300 WP_086398781.1 3761198..3762352(+) (tsaP) [Acinetobacter pittii strain JXA13]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTVVETYAASPNHNPPSLRSNAPHVYIVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTEGGKIIRVMGSIGTAAKNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=451065 HRJ47_RS18300 WP_086398781.1 3761198..3762352(+) (tsaP) [Acinetobacter pittii strain JXA13]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGGTAGTAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAGAAGTAATGCAC
CACATGTCTACATAGTAAAACGAGGAGATACGCTATGGGATATTTCTGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTATCCTGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAACATATCAAACAATGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACATACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTGGCGGC
AAAAGGTCAAACTATTTATGCGCGCGGACAAGGTTTAATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGAAGCAACATTACCTACTTTGTTTTATCCGGTAGATGCCACTCAGGTGACAGAGGGCGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGCCAAAAATAGTGTGGTGACTTTGGACCGAGGTACAGCACAAGGTATCCAAGTAGGACAA
GTTTTTGATATTACGCAACAAGGTGAAACCATTAGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTTTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.323

100

0.893