Detailed information NTG0451059

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HRJ47_RS17510
• Genome accession: NZ_CP054137
• Coordinates: 3603669..3604529 (+)
• Length: 286 a.a.
• NCBI ID: WP_086400328.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain JXA13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3598669..3609529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRJ47_RS17490 (HRJ47_17480)	secG	3599276..3599605 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
HRJ47_RS17495 (HRJ47_17485)	tpiA	3599618..3600412 (-)	795	WP_017398730.1	triose-phosphate isomerase	-
HRJ47_RS17500 (HRJ47_17490)	pilB	3600704..3602416 (+)	1713	WP_086400327.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HRJ47_RS17505 (HRJ47_17495)	pilC	3602443..3603669 (+)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
HRJ47_RS17510 (HRJ47_17500)	pilD	3603669..3604529 (+)	861	WP_086400328.1	prepilin peptidase	Machinery gene
HRJ47_RS17515 (HRJ47_17505)	coaE	3604531..3605127 (+)	597	WP_086400329.1	dephospho-CoA kinase	-
HRJ47_RS17520 (HRJ47_17510)	-	3605124..3606038 (-)	915	WP_086400330.1	DMT family transporter	-
HRJ47_RS17525 (HRJ47_17515)	rlmB	3606074..3606823 (-)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
HRJ47_RS17530 (HRJ47_17520)	-	3606926..3607252 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
HRJ47_RS17535 (HRJ47_17525)	-	3607329..3608639 (-)	1311	WP_086400331.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32126.66 Da
• Isoelectric Point: 7.5057

>NTDB_id=451059 HRJ47_RS17510 WP_086400328.1 3603669..3604529(+) (pilD) [Acinetobacter pittii strain JXA13]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIVGIILLKLRNNNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=451059 HRJ47_RS17510 WP_086400328.1 3603669..3604529(+) (pilD) [Acinetobacter pittii strain JXA13]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAGTATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTATG
GCGACTTTAAACTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTGTTGGCATCATTTTACTAAAATTGCGCAATAATAATCAGCCCTTTGCGTTTGGGCCCTATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Acinetobacter nosocomialis M2	95.105	100	0.951
pilD	Vibrio cholerae strain A1552	54.212	95.455	0.517
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437