Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   I6G22_RS05700 Genome accession   NZ_CP065737
Coordinates   1076815..1077600 (+) Length   261 a.a.
NCBI ID   WP_023189497.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071815..1082600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS05670 (I6G22_05675) - 1071879..1072313 (-) 435 WP_021722897.1 YdeI/OmpD-associated family protein -
  I6G22_RS05675 (I6G22_05680) - 1072351..1072635 (-) 285 WP_010905114.1 hypothetical protein -
  I6G22_RS05680 (I6G22_05685) - 1072766..1074319 (-) 1554 WP_025016995.1 ABC-F family ATP-binding cassette domain-containing protein -
  I6G22_RS05685 (I6G22_05690) - 1074349..1074816 (-) 468 WP_015425634.1 DUF3013 family protein -
  I6G22_RS05690 (I6G22_05695) - 1074969..1075457 (+) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  I6G22_RS05695 (I6G22_05700) rarA 1075501..1076760 (+) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  I6G22_RS05700 (I6G22_05705) spo0J 1076815..1077600 (+) 786 WP_023189497.1 ParB/RepB/Spo0J family partition protein Regulator
  I6G22_RS05705 (I6G22_05710) - 1077653..1079434 (-) 1782 WP_025016994.1 heavy metal translocating P-type ATPase -
  I6G22_RS05710 (I6G22_05715) rpmF 1079798..1079971 (+) 174 WP_010905107.1 50S ribosomal protein L32 -
  I6G22_RS05715 (I6G22_05720) rpmG 1080001..1080150 (+) 150 WP_003132258.1 50S ribosomal protein L33 -
  I6G22_RS05720 (I6G22_05725) - 1080717..1080884 (+) 168 WP_003132257.1 lactococcin family bacteriocin -
  I6G22_RS05725 (I6G22_05730) - 1080886..1081188 (+) 303 WP_003132256.1 hypothetical protein -
  I6G22_RS05730 (I6G22_05735) - 1081578..1082051 (-) 474 WP_023189495.1 hypothetical protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29741.60 Da        Isoelectric Point: 9.5731

>NTDB_id=451014 I6G22_RS05700 WP_023189497.1 1076815..1077600(+) (spo0J) [Lactococcus lactis strain FDAARGOS_865]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENRDISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=451014 I6G22_RS05700 WP_023189497.1 1076815..1077600(+) (spo0J) [Lactococcus lactis strain FDAARGOS_865]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAACCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGATATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTGGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471