Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HRJ37_RS08250 Genome accession   NZ_CP054136
Coordinates   1604954..1605856 (+) Length   300 a.a.
NCBI ID   WP_024720349.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 11-1-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1599954..1610856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ37_RS08230 (HRJ37_08230) - 1600623..1602356 (+) 1734 WP_173407992.1 glycosyltransferase -
  HRJ37_RS08235 (HRJ37_08235) - 1602353..1602628 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  HRJ37_RS08240 (HRJ37_08240) sucC 1602805..1603965 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  HRJ37_RS08245 (HRJ37_08245) sucD 1603988..1604890 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  HRJ37_RS08250 (HRJ37_08250) dprA 1604954..1605856 (+) 903 WP_024720349.1 DNA-processing protein DprA Machinery gene
  HRJ37_RS08255 (HRJ37_08255) topA 1606051..1608126 (+) 2076 WP_008344821.1 type I DNA topoisomerase -
  HRJ37_RS08260 (HRJ37_08260) trmFO 1608197..1609501 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HRJ37_RS08265 (HRJ37_08265) xerC 1609564..1610481 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34059.40 Da        Isoelectric Point: 8.2776

>NTDB_id=450988 HRJ37_RS08250 WP_024720349.1 1604954..1605856(+) (dprA) [Bacillus altitudinis strain 11-1-1]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKLVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=450988 HRJ37_RS08250 WP_024720349.1 1604954..1605856(+) (dprA) [Bacillus altitudinis strain 11-1-1]
ATGTACAACGTGTCCGAAAGAATGATTTTTCATCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAACTTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.373

95.667

0.377