Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | HRJ71_RS06185 | Genome accession | NZ_CP054113 |
| Coordinates | 1266810..1268171 (+) | Length | 453 a.a. |
| NCBI ID | WP_010930258.1 | Uniprot ID | A0AAI9J212 |
| Organism | Bordetella pertussis strain NZ17 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1215176..1268171 | 1266810..1268171 | within | 0 |
Gene organization within MGE regions
Location: 1215176..1268171
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRJ71_RS05900 (HRJ71_05860) | - | 1215176..1215529 (-) | 354 | WP_010930230.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| HRJ71_RS05905 (HRJ71_05865) | - | 1215613..1216602 (-) | 990 | WP_010930231.1 | M14 family metallopeptidase | - |
| HRJ71_RS05910 (HRJ71_05870) | - | 1216805..1217754 (+) | 950 | Protein_1157 | IS481-like element IS481 family transposase | - |
| HRJ71_RS05915 (HRJ71_05875) | - | 1217851..1218799 (+) | 949 | Protein_1158 | IS481-like element IS481 family transposase | - |
| HRJ71_RS05920 (HRJ71_05880) | - | 1218865..1219728 (-) | 864 | WP_010930232.1 | DMT family transporter | - |
| HRJ71_RS05925 (HRJ71_05885) | - | 1219849..1220013 (-) | 165 | WP_019247643.1 | hypothetical protein | - |
| HRJ71_RS05930 (HRJ71_05890) | - | 1220074..1221009 (-) | 936 | WP_010930233.1 | LysR family transcriptional regulator | - |
| HRJ71_RS05935 (HRJ71_05895) | - | 1221122..1221859 (-) | 738 | WP_010930234.1 | amino acid ABC transporter ATP-binding protein | - |
| HRJ71_RS05940 (HRJ71_05900) | - | 1221879..1222568 (-) | 690 | WP_003810420.1 | amino acid ABC transporter permease | - |
| HRJ71_RS05945 (HRJ71_05905) | - | 1222561..1223250 (-) | 690 | WP_003810422.1 | amino acid ABC transporter permease | - |
| HRJ71_RS05950 (HRJ71_05910) | - | 1223354..1224070 (-) | 717 | WP_010928212.1 | ABC transporter substrate-binding protein | - |
| HRJ71_RS05955 (HRJ71_05915) | - | 1224233..1225435 (-) | 1203 | WP_010930235.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| HRJ71_RS05960 (HRJ71_05920) | - | 1225432..1226112 (-) | 681 | WP_010930236.1 | RraA family protein | - |
| HRJ71_RS05965 (HRJ71_05925) | - | 1226398..1226592 (+) | 195 | WP_019247642.1 | hypothetical protein | - |
| HRJ71_RS05970 (HRJ71_05930) | - | 1226749..1227633 (+) | 885 | WP_010930237.1 | hypothetical protein | - |
| HRJ71_RS05975 (HRJ71_05935) | - | 1227645..1227863 (+) | 219 | WP_010930238.1 | oxidoreductase-like domain-containing protein | - |
| HRJ71_RS05980 (HRJ71_05940) | - | 1227871..1228299 (-) | 429 | WP_003818579.1 | copper resistance protein NlpE | - |
| HRJ71_RS05985 (HRJ71_05945) | - | 1228527..1228973 (+) | 447 | WP_003810437.1 | carboxymuconolactone decarboxylase family protein | - |
| HRJ71_RS05990 (HRJ71_05950) | - | 1228966..1229871 (+) | 906 | WP_003818580.1 | sigma-70 family RNA polymerase sigma factor | - |
| HRJ71_RS05995 (HRJ71_05955) | - | 1230016..1230342 (+) | 327 | WP_003818581.1 | hypothetical protein | - |
| HRJ71_RS06000 (HRJ71_05960) | - | 1230367..1230585 (+) | 219 | WP_003810443.1 | DUF3820 family protein | - |
| HRJ71_RS06005 (HRJ71_05965) | - | 1230635..1231252 (+) | 618 | WP_010930239.1 | NUDIX hydrolase | - |
| HRJ71_RS06010 (HRJ71_05970) | - | 1231249..1231590 (+) | 342 | WP_003818584.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| HRJ71_RS06015 (HRJ71_05975) | - | 1231624..1232778 (-) | 1155 | WP_010930240.1 | hypothetical protein | - |
| HRJ71_RS06020 (HRJ71_05980) | btr | 1232775..1233503 (-) | 729 | WP_010930241.1 | oxygen-responsive transcriptional regulator Btr | - |
| HRJ71_RS06025 (HRJ71_05985) | clpB | 1233841..1236438 (+) | 2598 | WP_010930242.1 | ATP-dependent chaperone ClpB | - |
| HRJ71_RS06030 (HRJ71_05990) | - | 1236754..1237092 (+) | 339 | Protein_1181 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| HRJ71_RS06035 (HRJ71_05995) | - | 1237195..1238145 (+) | 951 | WP_005012067.1 | IS481-like element IS481 family transposase | - |
| HRJ71_RS06040 (HRJ71_06000) | - | 1238184..1239632 (+) | 1449 | WP_024000529.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| HRJ71_RS06045 (HRJ71_06005) | tcfA | 1240016..1241959 (+) | 1944 | WP_010930243.1 | autotransporter TcfA | - |
| HRJ71_RS06050 (HRJ71_06010) | - | 1242056..1242751 (-) | 696 | WP_010930244.1 | TetR family transcriptional regulator | - |
| HRJ71_RS06055 (HRJ71_06015) | - | 1242909..1244117 (+) | 1209 | WP_010930245.1 | Tm-1-like ATP-binding domain-containing protein | - |
| HRJ71_RS06060 (HRJ71_06020) | - | 1244127..1244957 (+) | 831 | WP_010930246.1 | phosphoenolpyruvate hydrolase family protein | - |
| HRJ71_RS06065 (HRJ71_06025) | - | 1245025..1245477 (+) | 453 | WP_010930247.1 | SRPBCC family protein | - |
| HRJ71_RS06070 (HRJ71_06030) | - | 1245485..1246447 (-) | 963 | WP_010930248.1 | LysR family transcriptional regulator | - |
| HRJ71_RS06075 (HRJ71_06035) | - | 1246552..1247994 (+) | 1443 | WP_010930249.1 | N-acyl-D-glutamate deacylase | - |
| HRJ71_RS06080 (HRJ71_06040) | - | 1248045..1249001 (+) | 957 | WP_010930250.1 | tripartite tricarboxylate transporter substrate binding protein BugE | - |
| HRJ71_RS06085 (HRJ71_06045) | - | 1249017..1250396 (-) | 1380 | WP_010930251.1 | sulfite reductase subunit alpha | - |
| HRJ71_RS06090 (HRJ71_06050) | - | 1250396..1251412 (-) | 1017 | WP_010930252.1 | FAD:protein FMN transferase | - |
| HRJ71_RS06095 (HRJ71_06055) | - | 1251417..1252217 (-) | 801 | WP_014905623.1 | DUF4198 domain-containing protein | - |
| HRJ71_RS06100 (HRJ71_06060) | - | 1252247..1252762 (-) | 516 | WP_010930254.1 | DUF2271 domain-containing protein | - |
| HRJ71_RS06105 (HRJ71_06065) | - | 1252785..1253414 (-) | 630 | WP_003810476.1 | PepSY-associated TM helix domain-containing protein | - |
| HRJ71_RS06110 (HRJ71_06070) | - | 1253561..1254508 (+) | 948 | WP_004568579.1 | ATP-binding cassette domain-containing protein | - |
| HRJ71_RS06115 (HRJ71_06075) | - | 1254505..1255290 (+) | 786 | WP_003818606.1 | ABC transporter permease | - |
| HRJ71_RS06120 (HRJ71_06080) | - | 1255379..1255939 (+) | 561 | WP_003818608.1 | HdeD family acid-resistance protein | - |
| HRJ71_RS06125 (HRJ71_06085) | crcB | 1255949..1256335 (+) | 387 | WP_003818609.1 | fluoride efflux transporter CrcB | - |
| HRJ71_RS06130 (HRJ71_06090) | hpnE | 1256358..1257689 (-) | 1332 | WP_010930255.1 | hydroxysqualene dehydroxylase HpnE | - |
| HRJ71_RS06135 (HRJ71_06095) | hpnD | 1257686..1258549 (-) | 864 | WP_010930256.1 | presqualene diphosphate synthase HpnD | - |
| HRJ71_RS06140 (HRJ71_06100) | hpnC | 1258551..1259381 (-) | 831 | WP_003810490.1 | squalene synthase HpnC | - |
| HRJ71_RS06145 (HRJ71_06105) | alr | 1259510..1260637 (+) | 1128 | WP_003810492.1 | alanine racemase | - |
| HRJ71_RS06150 (HRJ71_06110) | - | 1260789..1261505 (+) | 717 | WP_003810494.1 | SDR family oxidoreductase | - |
| HRJ71_RS06155 (HRJ71_06115) | - | 1261519..1262211 (-) | 693 | WP_010930257.1 | membrane protein | - |
| HRJ71_RS06160 (HRJ71_06120) | - | 1262317..1263267 (+) | 951 | WP_005013747.1 | IS481-like element IS481 family transposase | - |
| HRJ71_RS06165 (HRJ71_06125) | - | 1263264..1263680 (-) | 417 | WP_240079928.1 | sigma-70 family RNA polymerase sigma factor | - |
| HRJ71_RS06170 (HRJ71_06130) | - | 1263744..1264694 (+) | 951 | WP_010930208.1 | IS481-like element IS481 family transposase | - |
| HRJ71_RS06175 (HRJ71_06135) | - | 1264691..1264891 (-) | 201 | Protein_1210 | sigma factor | - |
| HRJ71_RS06180 (HRJ71_06140) | - | 1264969..1266774 (-) | 1806 | WP_224019273.1 | VWA domain-containing protein | - |
| HRJ71_RS06185 (HRJ71_06145) | radA | 1266810..1268171 (+) | 1362 | WP_010930258.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 47935.07 Da Isoelectric Point: 7.1753
>NTDB_id=450822 HRJ71_RS06185 WP_010930258.1 1266810..1268171(+) (radA) [Bordetella pertussis strain NZ17]
MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR
MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR
Nucleotide
Download Length: 1362 bp
>NTDB_id=450822 HRJ71_RS06185 WP_010930258.1 1266810..1268171(+) (radA) [Bordetella pertussis strain NZ17]
ATGGCGAAATCCCGAACCATCTATGTCTGCGCCGAATGCGGCGGCACCAGCCTCAAGTGGCAAGGCAAGTGCCCGCACTG
CTCGGCCTGGAATACCCTGGAAGAAACCGTGGAGTCCGCCGCGCCCTCGGCCGGCGGGCATCGCTACGCGCCCCTGGCGG
CAGCCAGCCCGGTGCGCAGCTTGTCCGAAATCGAAGCGCGCGAGACGCCGCGCCAGCCCACCGGACTGGACGAGTTCGAC
CGCGTGCTGGGCGGCGGGCTGGTCGCCGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCGCTGGCCTCGCTGTCGGCCACGACCAAGGTGTTGTACGTCACCGGTGAAGAGTCGGCCGAACAGGTCGCGC
TGCGGGCGCGCCGGCTGGGCCTGCAGACCGGCAATGTCGACTTGCTGGCCGAGATCCGGCTCGAGGCGATCCAGGCGGCC
GTGTCCGAACAGAAGCCGACCGTGGCGGTGATCGATTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCCGCGCCGGG
CTCGGTGTCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGCTGGCCAAGCAGACCGGCATCGCCATCGTGATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTCGACACGGTGCTGTACTTCGAGGGC
GACACGCATTCGTCGTTTCGCCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTTCTCTCGCAGCACCAGCAGCAGGTGGCCGGTTCCT
GCGTGCTGGCGACCCAGGAAGGGACGCGCCCGCTGCTGGTGGAAGTGCAGGCGCTCGTCGATACTTCGCATGCGCCCAAT
CCGCGCCGCCTGACGGTGGGGCTGGAGGGTAATCGCCTGGCCATGCTGCTGGCCGTCATGCACCGCCATGCGGGCGTCTC
GACCTACGACCAGGACGTATTCGTCAATGCCGTGGGCGGGGTGCGCATCACCGAGCCGGCGGCCGACCTGCCGGTACTGC
TGGCCATCATGTCATCGCTGCGCGACAAGCCGCTGCCCGCCGGCCTGGTGGCGTTCGGCGAGATCGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGCGCGAAGCGGCCAAGCTGGGGTTCAGCGTTGCGCTGATTCCCAAGGC
CAATGCGCCGCGCCAGCCTATCGAAGGGCTGGAGATATGGGCCGTGGATCGGCTGGACGCCGCCCTGGACAAATTGCGTT
GA
ATGGCGAAATCCCGAACCATCTATGTCTGCGCCGAATGCGGCGGCACCAGCCTCAAGTGGCAAGGCAAGTGCCCGCACTG
CTCGGCCTGGAATACCCTGGAAGAAACCGTGGAGTCCGCCGCGCCCTCGGCCGGCGGGCATCGCTACGCGCCCCTGGCGG
CAGCCAGCCCGGTGCGCAGCTTGTCCGAAATCGAAGCGCGCGAGACGCCGCGCCAGCCCACCGGACTGGACGAGTTCGAC
CGCGTGCTGGGCGGCGGGCTGGTCGCCGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCGCTGGCCTCGCTGTCGGCCACGACCAAGGTGTTGTACGTCACCGGTGAAGAGTCGGCCGAACAGGTCGCGC
TGCGGGCGCGCCGGCTGGGCCTGCAGACCGGCAATGTCGACTTGCTGGCCGAGATCCGGCTCGAGGCGATCCAGGCGGCC
GTGTCCGAACAGAAGCCGACCGTGGCGGTGATCGATTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCCGCGCCGGG
CTCGGTGTCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGCTGGCCAAGCAGACCGGCATCGCCATCGTGATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTCGACACGGTGCTGTACTTCGAGGGC
GACACGCATTCGTCGTTTCGCCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTTCTCTCGCAGCACCAGCAGCAGGTGGCCGGTTCCT
GCGTGCTGGCGACCCAGGAAGGGACGCGCCCGCTGCTGGTGGAAGTGCAGGCGCTCGTCGATACTTCGCATGCGCCCAAT
CCGCGCCGCCTGACGGTGGGGCTGGAGGGTAATCGCCTGGCCATGCTGCTGGCCGTCATGCACCGCCATGCGGGCGTCTC
GACCTACGACCAGGACGTATTCGTCAATGCCGTGGGCGGGGTGCGCATCACCGAGCCGGCGGCCGACCTGCCGGTACTGC
TGGCCATCATGTCATCGCTGCGCGACAAGCCGCTGCCCGCCGGCCTGGTGGCGTTCGGCGAGATCGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGCGCGAAGCGGCCAAGCTGGGGTTCAGCGTTGCGCTGATTCCCAAGGC
CAATGCGCCGCGCCAGCCTATCGAAGGGCTGGAGATATGGGCCGTGGATCGGCTGGACGCCGCCCTGGACAAATTGCGTT
GA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
48.904 |
100 |
0.492 |
| radA | Streptococcus mitis NCTC 12261 |
46.07 |
100 |
0.466 |
| radA | Streptococcus pneumoniae D39 |
48.26 |
95.143 |
0.459 |
| radA | Streptococcus pneumoniae TIGR4 |
48.26 |
95.143 |
0.459 |
| radA | Streptococcus mitis SK321 |
48.26 |
95.143 |
0.459 |
| radA | Streptococcus pneumoniae R6 |
48.26 |
95.143 |
0.459 |
| radA | Streptococcus pneumoniae Rx1 |
48.26 |
95.143 |
0.459 |