Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6G42_RS01150 Genome accession   NZ_CP065707
Coordinates   229276..232107 (-) Length   943 a.a.
NCBI ID   WP_038804650.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 224276..237107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS01135 (I6G42_01135) spx 224626..225024 (-) 399 WP_000591165.1 transcriptional regulator Spx -
  I6G42_RS01140 (I6G42_01140) mgtA 225159..227819 (-) 2661 WP_038804647.1 magnesium-translocating P-type ATPase -
  I6G42_RS01145 (I6G42_01145) - 228222..229283 (-) 1062 WP_038804649.1 M24 family metallopeptidase -
  I6G42_RS01150 (I6G42_01150) uvrA 229276..232107 (-) 2832 WP_038804650.1 excinuclease ABC subunit UvrA Machinery gene
  I6G42_RS01155 (I6G42_01155) - 232244..233188 (+) 945 WP_038804651.1 magnesium transporter CorA family protein -
  I6G42_RS01160 (I6G42_01160) - 233200..233877 (+) 678 WP_038804652.1 DUF1129 domain-containing protein -
  I6G42_RS01165 (I6G42_01165) - 234020..235054 (+) 1035 WP_038804653.1 S66 family peptidase -
  I6G42_RS01170 (I6G42_01170) - 235160..235423 (+) 264 WP_000166112.1 SemiSWEET family transporter -
  I6G42_RS01175 (I6G42_01175) - 235506..236069 (-) 564 WP_038804654.1 DNA-3-methyladenine glycosylase I -
  I6G42_RS01180 (I6G42_01180) ruvA 236079..236672 (-) 594 WP_038804655.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104090.08 Da        Isoelectric Point: 6.3907

>NTDB_id=450786 I6G42_RS01150 WP_038804650.1 229276..232107(-) (uvrA) [Streptococcus oralis strain FDAARGOS_885]
MQDKIVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDAIDGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGAIKASSVEQIVDKVLELPERQRLQILAPVIRKKK
GQHKSVIEKVQKDGYVRVRVDGEVYDVTEVPELSKSKKHNIDVVVDRIVIKEGIRSRLFDSIEAALRIAEGYVIIDTMDD
SELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCSECDGLGIKLEVDTDLVVPDTSKTLREGALAPWNPISSNYYPNML
EQAMTAFGVDMDKPFEDLSEEDKNLILYGSEGKEFHFHYENEFGGVRDIDIPFEGVVNNIKRRYHETNSDYTRTQMRLYM
NELTCGTCHGYRLNDQALSVRVGGEQGPHIGEISDLSIADHLELVSQLTLSENEAIIARPILKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADYLI
DVGPGAGVFGGEIVAAGTPKQVARNSKSITGQYLSGKRAIPVPAERRSGNGRFIEVTGARENNLQNVTARFPLGKFIAVT
GVSGSGKSTLINSILKKAIAQKLNRNSDKPGKFKTITGIEHVDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVACEVCHGTRYNSETLEVHYKEKNISQVLDMTVNDAVEFF
QHIPKIQRKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTEDIARLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIIATGTPEEVAGNEASYTGHYLKGKLHHE

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=450786 I6G42_RS01150 WP_038804650.1 229276..232107(-) (uvrA) [Streptococcus oralis strain FDAARGOS_885]
ATGCAAGATAAAATTGTGATTCATGGGGCACGTGCCCATAACTTAAAAAATATCGATGTGGAGATTCCTAGAGACAAGCT
GGTCGTCGTAACGGGCTTGTCAGGTTCTGGGAAATCCAGTCTAGCTTTTGATACCCTCTATGCGGAGGGACAACGTCGCT
ATGTAGAGAGTTTGTCAGCCTACGCTCGCCAGTTCTTGGGCAATATGGAAAAACCAGACGTGGATGCTATTGATGGCCTC
AGCCCAGCTATTTCCATTGACCAGAAAACCACCAGCAAAAACCCGCGCTCGACCGTTGGAACAACGACTGAAATCAATGA
CTATCTGCGTCTCCTCTACGCACGTGTGGGGACGCCTTACTGTATCAACGGGCATGGGGCTATCAAGGCTTCTTCTGTTG
AGCAAATCGTTGATAAGGTCTTGGAGTTGCCTGAACGTCAGCGTTTGCAAATTTTAGCTCCTGTCATTCGTAAGAAAAAA
GGGCAACATAAGAGCGTCATTGAAAAGGTTCAGAAAGACGGCTACGTCCGCGTCCGAGTGGATGGGGAAGTCTATGATGT
GACCGAAGTACCAGAGCTATCCAAGAGCAAGAAGCACAATATCGATGTCGTGGTTGACCGTATTGTCATCAAGGAGGGTA
TCCGTAGCCGTCTCTTTGACTCCATTGAGGCTGCCCTTCGTATCGCAGAAGGCTATGTGATTATCGACACTATGGACGAT
TCTGAGTTGCTCTTCTCTGAGCATTATGCTTGCCCAGTTTGTGGCTTTACTGTTCCAGAGTTAGAGCCTCGTCTCTTCTC
CTTTAATGCCCCTTTTGGCTCTTGTAGCGAGTGTGATGGTTTAGGCATCAAGCTGGAGGTGGATACTGATTTGGTAGTTC
CTGATACCAGCAAAACTTTGCGTGAGGGGGCTTTGGCTCCTTGGAATCCTATCTCATCCAACTACTATCCAAACATGCTG
GAACAAGCCATGACAGCCTTTGGAGTGGATATGGATAAGCCTTTTGAGGACTTGTCAGAAGAAGATAAAAACTTGATTCT
CTATGGGTCTGAGGGCAAGGAATTTCATTTCCACTATGAGAATGAATTTGGCGGTGTGCGCGATATCGACATTCCTTTTG
AGGGAGTTGTCAATAATATCAAGCGTCGTTACCATGAGACTAACAGTGATTACACCCGCACTCAGATGCGCCTCTATATG
AATGAACTGACCTGCGGAACTTGTCACGGCTACCGTCTTAACGATCAGGCCTTGTCTGTCCGTGTGGGTGGCGAGCAAGG
TCCCCATATCGGAGAGATTTCAGACTTGTCTATCGCAGACCACTTGGAGTTGGTGAGCCAGCTGACCTTATCTGAAAATG
AAGCCATCATAGCTCGTCCTATTCTCAAGGAAATTAAGGACCGTTTGACCTTCCTCAATAACGTGGGTCTTAATTATCTA
ACCCTGTCACGTTCGGCAGGAACCCTATCAGGAGGAGAGAGTCAGCGTATTCGCTTGGCAACCCAGATTGGTTCTAATCT
ATCAGGCGTCCTTTATATTCTAGATGAGCCGTCGATCGGACTTCACCAGAGGGACAATGACCGTCTCATTGCCAGCTTGA
AAAAAATGCGTGACTTGGGCAATACTCTCATCGTTGTGGAACACGACGAAGATACCATGCGCGAGGCGGATTATCTGATT
GACGTTGGTCCTGGTGCGGGAGTCTTTGGTGGGGAAATCGTCGCTGCAGGGACACCTAAGCAAGTGGCTCGCAACAGTAA
GTCCATCACAGGTCAGTACTTGTCGGGCAAAAGAGCCATTCCAGTGCCAGCAGAGCGCCGTTCCGGAAATGGTCGTTTTA
TCGAGGTGACAGGAGCGCGTGAGAACAACTTGCAAAATGTCACTGCTCGCTTCCCACTAGGAAAATTTATCGCAGTGACG
GGGGTATCTGGCTCAGGGAAATCGACCCTAATCAACAGCATCCTCAAAAAAGCTATTGCTCAGAAACTCAACCGCAATTC
AGACAAACCTGGTAAGTTTAAAACGATTACAGGGATTGAGCATGTGGATCGTCTGATTGATATTGACCAGAGCCCAATCG
GACGGACACCGAGGTCTAATCCAGCTACCTATACAGGAGTTTTTGACGATATACGTGACCTTTTTGCCCAGACAAATGAA
GCTAAGATTAGAGGCTACAAGAAGGGTCGTTTCAGTTTCAACGTCAAGGGAGGTCGTTGTGAAGCCTGCTCAGGTGACGG
GATTATCAAGATCGAGATGCACTTCTTGCCAGATGTTTACGTGGCTTGTGAAGTCTGCCACGGGACTCGCTACAACAGTG
AAACCCTAGAAGTCCACTATAAGGAAAAGAATATCTCGCAGGTCTTGGACATGACCGTCAACGATGCGGTGGAATTTTTC
CAACACATTCCTAAGATTCAACGCAAACTTCAGACCATCAAGGATGTGGGGCTGGGCTATGTAACGTTAGGGCAACCAGC
TACGACCCTTTCAGGGGGAGAAGCCCAACGTATGAAGTTGGCTAGTGAACTCCACAAACGCTCGACAGGAAAATCTTTCT
ACATTCTGGATGAGCCAACGACAGGGCTTCATACTGAGGACATTGCTCGCTTGCTCAAGGTCTTAGCTCGCTTTGTCGAC
GATGGCAATACAGTCCTCGTCATCGAGCACAATTTGGATGTCATCAAGACGGCAGACCATATCATCGATTTGGGACCTGA
GGGCGGTGTCGGTGGTGGAACCATCATCGCAACAGGAACTCCAGAAGAAGTAGCGGGCAATGAAGCCAGCTACACAGGAC
ACTATTTGAAAGGAAAGTTACATCATGAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

98.197

100

0.982
  uvrA Streptococcus pneumoniae TIGR4

98.197

100

0.982
  uvrA Streptococcus pneumoniae D39

98.197

100

0.982