Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   I6G43_RS08290 Genome accession   NZ_CP065706
Coordinates   1726570..1727619 (-) Length   349 a.a.
NCBI ID   WP_038805773.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1721570..1732619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS08260 (I6G43_08260) - 1722704..1723003 (-) 300 WP_001041396.1 YlxQ-related RNA-binding protein -
  I6G43_RS08265 (I6G43_08265) rnpM 1722996..1723289 (-) 294 WP_000857568.1 RNase P modulator RnpM -
  I6G43_RS08270 (I6G43_08270) nusA 1723311..1724447 (-) 1137 WP_000032278.1 transcription termination factor NusA -
  I6G43_RS08275 (I6G43_08275) rimP 1724491..1724970 (-) 480 WP_000338692.1 ribosome maturation factor RimP -
  I6G43_RS08280 (I6G43_08280) trmB 1725096..1725731 (-) 636 WP_001266088.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I6G43_RS08285 (I6G43_08285) ccrZ 1725728..1726522 (-) 795 WP_038805772.1 cell cycle regulator CcrZ -
  I6G43_RS08290 (I6G43_08290) pptB 1726570..1727619 (-) 1050 WP_038805773.1 ABC transporter permease Regulator
  I6G43_RS08295 (I6G43_08295) pptA 1727616..1728347 (-) 732 WP_038805774.1 ABC transporter ATP-binding protein Regulator
  I6G43_RS08300 (I6G43_08300) - 1728415..1728825 (+) 411 WP_038805775.1 HIT family protein -
  I6G43_RS08305 (I6G43_08305) - 1728835..1729113 (+) 279 WP_038805776.1 hypothetical protein -
  I6G43_RS08310 (I6G43_08310) - 1729177..1729836 (+) 660 WP_038805777.1 hypothetical protein -
  I6G43_RS08315 (I6G43_08315) dnaJ 1729915..1731051 (-) 1137 WP_038805778.1 molecular chaperone DnaJ -
  I6G43_RS08320 (I6G43_08320) - 1731211..1731843 (-) 633 WP_038805779.1 DJ-1/PfpI family protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40249.19 Da        Isoelectric Point: 9.8406

>NTDB_id=450756 I6G43_RS08290 WP_038805773.1 1726570..1727619(-) (pptB) [Streptococcus oralis strain FDAARGOS_886]
MKDLFLKRKQAFRKECVGYLRYVLNDHFVLFLLVLIGFLAYQYSQLLQDFPENHWSILLFLGIVSALLLAWGGIATYIEV
PDKLFLLVSEEEVKSYLKGQTVRSLVFWTIVQTLFLLLFAPLFLAMGYGLPVFLVYVLLLGAGKYLLFRQKASKFFTETG
LDWDYVIAQESKRKQVLLRFFALFTQVKGVSNSVKRRAYLDFLLKTVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAVIFIEQSWIATAVVVLFNYLMLFQLLALYHAFDYQYLTQLFPLEKGEKEKGLKQIVLGVGSVVLLLELLVGAVVFQE
KTALLVLVGASLVLQLFYLPYQVKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=450756 I6G43_RS08290 WP_038805773.1 1726570..1727619(-) (pptB) [Streptococcus oralis strain FDAARGOS_886]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTGTCGGTTATCTGCGTTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTGGTTCTCATCGGTTTTCTAGCCTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAACC
ATTGGTCTATCCTTTTGTTTTTGGGAATTGTATCTGCCTTGCTTTTGGCTTGGGGAGGAATCGCGACCTACATAGAAGTA
CCTGACAAGCTCTTTCTCTTAGTCAGTGAAGAGGAGGTCAAGTCATACCTCAAAGGGCAGACAGTGCGTTCACTGGTTTT
CTGGACAATTGTTCAAACCCTCTTTTTGCTCCTGTTTGCACCCTTGTTTTTAGCCATGGGCTATGGCTTGCCAGTCTTTC
TCGTTTATGTGCTTTTATTGGGAGCTGGGAAATACCTCCTCTTTCGCCAAAAAGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTACGTTATCGCCCAAGAAAGCAAGCGCAAGCAAGTCTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
CAAGGGCGTTTCAAACAGCGTCAAGCGTCGCGCTTATCTGGATTTCCTCCTAAAGACTGTTCAAAAGGTGCCTGGGAAGA
TCTGGCAAAACCTCTATCTTCGTTCTTATCTGCGAAATGGAGATCTCTTTGCCCTCAGTCTCCGCCTCTTGCTCCTATCC
TTGTTAGCTGTGATCTTTATCGAGCAGTCTTGGATTGCGACGGCAGTGGTTGTCCTGTTTAATTACCTTATGCTCTTCCA
GTTGCTGGCTCTCTATCACGCTTTTGACTACCAGTATTTGACCCAGCTCTTTCCTTTAGAAAAGGGTGAAAAAGAGAAGG
GATTGAAACAGATTGTGCTTGGTGTGGGAAGTGTTGTTCTTTTGTTGGAATTGCTAGTCGGAGCAGTAGTTTTTCAAGAA
AAAACAGCCTTGTTGGTTCTTGTGGGTGCAAGTCTTGTCCTACAATTATTTTATTTACCTTACCAAGTGAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.286

100

0.464