NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	I6G43_RS00760	Genome accession	NZ_CP065706
Coordinates	162885..163976 (+)	Length	363 a.a.
NCBI ID	WP_038805922.1	Uniprot ID	-
Organism	Streptococcus oralis strain FDAARGOS_886
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 157885..168976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G43_RS00735 (I6G43_00735)	pgsA	158409..158954 (-)	546	WP_000712144.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
I6G43_RS00740 (I6G43_00740)	rodZ	158965..159789 (-)	825	WP_001227950.1	cytoskeleton protein RodZ	-
I6G43_RS00745 (I6G43_00745)	yfmH	159825..161108 (-)	1284	WP_000189297.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
I6G43_RS00750 (I6G43_00750)	yfmF	161105..162355 (-)	1251	WP_038805920.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
I6G43_RS00755 (I6G43_00755)	yaaA	162514..162882 (+)	369	WP_038805921.1	S4 domain-containing protein YaaA	-
I6G43_RS00760 (I6G43_00760)	recF	162885..163976 (+)	1092	WP_038805922.1	DNA replication/repair protein RecF	Machinery gene
I6G43_RS00765 (I6G43_00765)	guaB	164035..165513 (-)	1479	WP_038805923.1	IMP dehydrogenase	-
I6G43_RS00770 (I6G43_00770)	trpS	165675..166700 (-)	1026	WP_000165466.1	tryptophan--tRNA ligase	-
I6G43_RS00775 (I6G43_00775)	-	166896..168518 (+)	1623	WP_000958794.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

Download Length: 363 a.a. Molecular weight: 41703.00 Da Isoelectric Point: 9.6011

                                >NTDB_id=450671 I6G43_RS00760 WP_038805922.1 162885..163976(+) (recF) [Streptococcus oralis strain FDAARGOS_886]

MWLQHLTMKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLLQKKTGS

IPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR

NTYLKSSQKIDETFLSVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNQSEKLSISYQSTVNFTNEEVLMDSFKI

ALEKSRSRDLFKKNTGVGPHRDDIAFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQ

LKLLETISQSIQTFITTTSLDHLQNLPGNLSIFNIQNGKISVK

Nucleotide

Download Length: 1092 bp

                                >NTDB_id=450671 I6G43_RS00760 WP_038805922.1 162885..163976(+) (recF) [Streptococcus oralis strain FDAARGOS_886]

ATGTGGCTCCAACATTTAACAATGAAAACCTTTCGCAACTATAAAGAGACGAAAATTGATTTTAATCCAAAATTAAACGT

CTTTTTAGGTCAAAATGCACAAGGAAAGACCAATATTCTAGAAGCAATCTATTTCTTGGCCTTAACTCGTAGTCATCGTA

CTCGGACAGATAAAAATCTCATTCATTTTGATGAAGAACAACTCCATCTTTCTGGCTTGCTACAGAAAAAAACAGGTTCT

ATCCCTCTAGAAATTGATCTAACACCGAAAGGGCGTGTGACTAAAGTCAATCATTTAAAACAAGCTCGCCTCTCAGACTA

TATTGGACATATGAATGTGGTTCTCTTTGCACCTGAAGATCTCCAGTTAATTAAAGGAGCACCCTCCGTTCGTCGAAAGT

TTATAGATATAGAACTGGGACAAATTAAACCAATCTACTTGTCAGACTTGTCAAACTATAACCACATACTCAAACAAAGA

AATACCTACCTAAAATCCAGCCAAAAGATTGACGAAACTTTTCTGTCGGTCTTAGATGATCAGTTAGTAGAGTATGGTTG

TCGCGTCATAAAGCATCGGATAAAATTCATTAAAGACTTAGAGAAATTTGGTCAAAAAAAACACTTAGAAATTTCAAACC

AATCAGAAAAGTTGTCAATATCTTATCAATCAACTGTCAACTTCACTAATGAAGAAGTCTTAATGGATTCTTTTAAAATA

GCTTTAGAGAAAAGTAGATCAAGAGATTTATTTAAAAAGAATACTGGTGTTGGCCCTCATCGAGATGACATTGCTTTCTA

TATCAATGGTATGGATGCTAGTTTTGGAAGTCAAGGGCAACATCGTAGTCTTGTACTTTCCATCAAACTAGCAGAGATTG

AACTAATGGAAAGCATTACTAACGAGTCTCCAATACTCTTGCTTGACGATGTTATGAGCGAACTTGACAACACGCGACAA

TTAAAATTACTAGAAACTATTTCACAATCTATTCAAACCTTTATCACAACAACAAGTTTAGACCACTTGCAAAACTTGCC

AGGAAATCTTAGTATTTTCAATATCCAAAACGGTAAAATATCTGTAAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Streptococcus pneumoniae R6	89.503	99.725	0.893
recF	Bacillus subtilis subsp. subtilis str. 168	45.38	100	0.46

Detailed information NTG0450671