Detailed information NTG0450526

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HQ868_RS20190
• Genome accession: NZ_CP054063
• Coordinates: 4141339..4142139 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain WSHvKP
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4136339..4147139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ868_RS20155 (HQ868_20155)	gspH	4136495..4137004 (+)	510	WP_064153121.1	type II secretion system minor pseudopilin GspH	-
HQ868_RS20160 (HQ868_20160)	gspI	4137007..4137372 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HQ868_RS20165 (HQ868_20165)	gspJ	4137369..4137965 (+)	597	WP_173424248.1	type II secretion system minor pseudopilin GspJ	-
HQ868_RS20170 (HQ868_20170)	gspK	4137962..4138948 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
HQ868_RS20175 (HQ868_20175)	gspL	4138935..4140128 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
HQ868_RS20180 (HQ868_20180)	-	4140121..4140606 (+)	486	WP_004151943.1	type II secretion system protein M	-
HQ868_RS20185 (HQ868_20185)	-	4140596..4141342 (+)	747	WP_004145897.1	type II secretion system protein N	-
HQ868_RS20190 (HQ868_20190)	pilD	4141339..4142139 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
HQ868_RS20195 (HQ868_20195)	hrpB	4142187..4144616 (-)	2430	WP_032437605.1	ATP-dependent helicase HrpB	-
HQ868_RS20200 (HQ868_20200)	thpR	4144689..4145225 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HQ868_RS20205 (HQ868_20205)	sfsA	4145225..4145941 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HQ868_RS20210 (HQ868_20210)	dksA	4146104..4146559 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=450526 HQ868_RS20190 WP_004145898.1 4141339..4142139(+) (pilD) [Klebsiella pneumoniae strain WSHvKP]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=450526 HQ868_RS20190 WP_004145898.1 4141339..4142139(+) (pilD) [Klebsiella pneumoniae strain WSHvKP]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425