Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   A20_RS09110 Genome accession   NC_018936
Coordinates   1821728..1822834 (+) Length   368 a.a.
NCBI ID   WP_010922801.1    Uniprot ID   -
Organism   Streptococcus pyogenes A20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1816728..1827834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A20_RS09090 (A20_1895) hasA 1817406..1818665 (+) 1260 WP_011285768.1 hyaluronan synthase HasA -
  A20_RS09095 (A20_1896) hasB 1818701..1819909 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  A20_RS09100 (A20_1897) hasC 1820091..1821005 (+) 915 WP_010922799.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  A20_RS09105 (A20_1898) yaaA 1821313..1821726 (+) 414 WP_010922800.1 S4 domain-containing protein YaaA -
  A20_RS09110 (A20_1899) recF 1821728..1822834 (+) 1107 WP_010922801.1 DNA replication/repair protein RecF Machinery gene
  A20_RS09115 (A20_1900c) - 1822889..1823752 (-) 864 WP_002992310.1 GRP family sugar transporter -
  A20_RS09120 (A20_1901c) guaB 1823954..1825435 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  A20_RS09125 (A20_1902c) trpS 1825773..1826795 (-) 1023 WP_010922803.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41839.76 Da        Isoelectric Point: 7.8294

>NTDB_id=45049 A20_RS09110 WP_010922801.1 1821728..1822834(+) (recF) [Streptococcus pyogenes A20]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDELAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=45049 A20_RS09110 WP_010922801.1 1821728..1822834(+) (recF) [Streptococcus pyogenes A20]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGAATTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462