Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   I6G80_RS14315 Genome accession   NZ_CP065647
Coordinates   2665318..2665800 (+) Length   160 a.a.
NCBI ID   WP_197941945.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2660318..2670800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS14290 (I6G80_14290) - 2660955..2661509 (+) 555 WP_017474525.1 SMI1/KNR4 family protein -
  I6G80_RS14295 (I6G80_14295) - 2661668..2663587 (+) 1920 WP_197941943.1 ribonuclease YeeF family protein -
  I6G80_RS14300 (I6G80_14300) - 2663589..2664023 (+) 435 WP_195536313.1 SMI1/KNR4 family protein -
  I6G80_RS14305 (I6G80_14305) - 2664078..2664542 (+) 465 WP_195536314.1 SMI1/KNR4 family protein -
  I6G80_RS14310 (I6G80_14310) - 2664633..2665208 (+) 576 WP_146874079.1 SMI1/KNR4 family protein -
  I6G80_RS14315 (I6G80_14315) rok 2665318..2665800 (+) 483 WP_197941945.1 hypothetical protein Regulator
  I6G80_RS14320 (I6G80_14320) - 2665871..2666224 (+) 354 WP_026579425.1 hypothetical protein -
  I6G80_RS14325 (I6G80_14325) - 2666365..2667624 (+) 1260 WP_197941947.1 MFS transporter -
  I6G80_RS14330 (I6G80_14330) rapC 2667736..2668842 (+) 1107 WP_197941949.1 hypothetical protein Regulator
  I6G80_RS25060 - 2668839..2668967 (+) 129 WP_021837855.1 hypothetical protein -
  I6G80_RS24815 - 2669402..2669485 (-) 84 WP_073411138.1 putative holin-like toxin -
  I6G80_RS14335 (I6G80_14335) - 2669687..2669986 (-) 300 WP_034291560.1 hypothetical protein -
  I6G80_RS14340 (I6G80_14340) - 2670005..2670259 (-) 255 WP_009328416.1 phage holin -
  I6G80_RS14345 (I6G80_14345) - 2670278..2670664 (-) 387 WP_021837858.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18443.21 Da        Isoelectric Point: 10.3708

>NTDB_id=450441 I6G80_RS14315 WP_197941945.1 2665318..2665800(+) (rok) [Bacillus licheniformis strain FDAARGOS_923]
MFNEREALRLRLEQLNDKEIIVMRELREEREGIYSKLRELDKKQSNPPQVRESSSLMDLVSAAAQELKQSKSSSPHIQTN
TTSQPFNKSITSIQREAALKILSMHKEGIRGASLRNEIEKETGMKVKNMTAFMSGLMKHHPEVKKPGRGHYIIKHEKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=450441 I6G80_RS14315 WP_197941945.1 2665318..2665800(+) (rok) [Bacillus licheniformis strain FDAARGOS_923]
ATGTTTAATGAGCGAGAGGCGTTACGCTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTCATGAGAGAACTTAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGTGAGTTGGACAAAAAACAGAGTAATCCTCCTCAAGTCAGAGAAAGCT
CTTCATTGATGGATTTAGTTAGCGCAGCAGCCCAAGAATTGAAACAGTCCAAAAGCTCATCTCCGCACATTCAGACAAAC
ACTACCTCGCAACCTTTTAATAAGTCTATAACATCTATACAGCGTGAAGCAGCACTTAAAATATTGAGTATGCATAAAGA
AGGCATTAGAGGGGCAAGTCTTCGCAACGAGATTGAAAAAGAAACAGGCATGAAAGTTAAAAATATGACAGCTTTTATGA
GCGGGCTCATGAAACACCATCCTGAAGTAAAGAAGCCAGGACGCGGTCATTATATTATTAAGCATGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

41.53

100

0.475