Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6H00_RS24740 Genome accession   NZ_CP065615
Coordinates   4929272..4930009 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_943     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4924272..4935009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H00_RS24710 (I6H00_24710) yfiL 4924424..4924789 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  I6H00_RS24715 (I6H00_24715) aroF 4924999..4926069 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6H00_RS24720 (I6H00_24720) tyrA 4926080..4927201 (+) 1122 WP_197939807.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6H00_RS24725 (I6H00_24725) pheA 4927244..4928404 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6H00_RS24730 (I6H00_24730) pheL 4928503..4928550 (-) 48 WP_010723158.1 phe operon leader peptide -
  I6H00_RS24735 (I6H00_24735) raiA 4928654..4928995 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6H00_RS24740 (I6H00_24740) comL 4929272..4930009 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6H00_RS24745 (I6H00_24745) rluD 4930144..4931124 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6H00_RS24750 (I6H00_24750) yfiH 4931121..4931852 (+) 732 WP_038341532.1 purine nucleoside phosphorylase YfiH -
  I6H00_RS24755 (I6H00_24755) clpC 4931982..4934555 (+) 2574 WP_038341531.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=450353 I6H00_RS24740 WP_000197686.1 4929272..4930009(-) (comL) [Escherichia coli strain FDAARGOS_943]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=450353 I6H00_RS24740 WP_000197686.1 4929272..4930009(-) (comL) [Escherichia coli strain FDAARGOS_943]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCGTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376