Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   FOC62_RS01030 Genome accession   NZ_CP054017
Coordinates   160824..161393 (+) Length   189 a.a.
NCBI ID   WP_002450744.1    Uniprot ID   -
Organism   Staphylococcus warneri strain FDAARGOS_754     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 155824..166393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC62_RS01005 (FOC62_01005) - 156661..158169 (+) 1509 WP_002450749.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  FOC62_RS01010 (FOC62_01010) - 158325..158927 (-) 603 WP_002450748.1 CPBP family glutamic-type intramembrane protease -
  FOC62_RS01015 (FOC62_01015) - 158933..159118 (-) 186 WP_002450747.1 DUF2187 family protein -
  FOC62_RS01020 (FOC62_01020) - 159323..160309 (+) 987 WP_002450746.1 lipoate--protein ligase -
  FOC62_RS01025 (FOC62_01025) - 160387..160605 (-) 219 WP_002450745.1 IDEAL domain-containing protein -
  FOC62_RS01030 (FOC62_01030) comK/comK1 160824..161393 (+) 570 WP_002450744.1 competence protein ComK Regulator
  FOC62_RS01045 (FOC62_01045) - 162212..162568 (-) 357 WP_002450743.1 DoxX family protein -
  FOC62_RS12065 - 162791..162892 (-) 102 WP_254388422.1 SAR1012 family small protein -
  FOC62_RS01050 (FOC62_01050) - 162996..163205 (-) 210 WP_002450742.1 TM2 domain-containing protein -
  FOC62_RS01055 (FOC62_01055) - 163409..163960 (+) 552 WP_037551950.1 GNAT family N-acetyltransferase -
  FOC62_RS01060 (FOC62_01060) - 164007..164945 (-) 939 WP_002450740.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22441.65 Da        Isoelectric Point: 9.4950

>NTDB_id=450181 FOC62_RS01030 WP_002450744.1 160824..161393(+) (comK/comK1) [Staphylococcus warneri strain FDAARGOS_754]
MTTQNIYVIRKGDMVIRPNYDDQNQPNGSEIIRFDKTVLQSPYKVQKIIERSCKFYGNNYLSKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQEENLWINMHYVDSIKELKHRKCKIIFANNETITLNVSFHSLWHQYTNAIFFYYMVDKQSRMKS
NDPDKPIDYEKSSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=450181 FOC62_RS01030 WP_002450744.1 160824..161393(+) (comK/comK1) [Staphylococcus warneri strain FDAARGOS_754]
ATGACAACTCAGAATATATACGTAATTAGAAAGGGAGACATGGTGATTAGGCCTAATTATGATGATCAAAATCAACCAAA
TGGTTCAGAAATTATTCGGTTTGATAAGACAGTCCTACAAAGTCCATATAAAGTTCAGAAGATTATTGAGAGGTCATGTA
AATTTTATGGCAACAATTATTTAAGTAAAAAGGCTGAAACCAATCGAATTACAGGTATCTCTAGTAAACCCCCAATTTTA
TTAACTCCTTTATTCCCAACTTACTTTTTTCCTACTCATTCAGATCGACAAGAAGAAAATTTATGGATTAACATGCATTA
TGTTGATTCTATTAAAGAATTAAAACATCGTAAATGTAAAATCATATTTGCAAACAATGAAACCATTACCCTAAATGTAT
CATTCCACAGTTTATGGCATCAGTATACGAACGCAATCTTCTTTTATTATATGGTAGATAAACAATCCCGTATGAAATCT
AATGACCCCGATAAACCTATCGATTATGAAAAATCCTCACTAAACATTTTTGAAGCATTATCACGTTATTCGCTATTTGT
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

79.365

100

0.794
  comK/comK1 Staphylococcus aureus N315

79.365

100

0.794