Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H03_RS13320 Genome accession   NZ_CP065607
Coordinates   2658353..2658889 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain FDAARGOS_946     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2653353..2663889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H03_RS13300 (I6H03_13310) aphA 2653641..2654354 (+) 714 WP_001418331.1 acid phosphatase AphA -
  I6H03_RS13305 (I6H03_13315) yjbQ 2654465..2654881 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6H03_RS13310 (I6H03_13320) yjbR 2654885..2655241 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  I6H03_RS13315 (I6H03_13325) uvrA 2655276..2658098 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  I6H03_RS13320 (I6H03_13330) ssb 2658353..2658889 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6H03_RS13325 (I6H03_13335) yjcB 2658988..2659269 (-) 282 WP_001295689.1 YjcB family protein -
  I6H03_RS13330 (I6H03_13340) pdeC 2659698..2661284 (+) 1587 WP_001016525.1 c-di-GMP phosphodiesterase PdeC -
  I6H03_RS13335 (I6H03_13345) soxS 2661287..2661610 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  I6H03_RS13340 (I6H03_13350) soxR 2661696..2662160 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=450177 I6H03_RS13320 WP_000168305.1 2658353..2658889(+) (ssb) [Escherichia coli strain FDAARGOS_946]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=450177 I6H03_RS13320 WP_000168305.1 2658353..2658889(+) (ssb) [Escherichia coli strain FDAARGOS_946]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489