Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOC63_RS10740 Genome accession   NZ_CP054015
Coordinates   2144608..2146380 (-) Length   590 a.a.
NCBI ID   WP_009854392.1    Uniprot ID   A0A060RI72
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2140599..2164890 2144608..2146380 within 0


Gene organization within MGE regions


Location: 2140599..2164890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS10715 (FOC63_10715) - 2140599..2141372 (-) 774 WP_009854387.1 ABC transporter ATP-binding protein -
  FOC63_RS10720 (FOC63_10720) - 2141385..2142305 (-) 921 WP_009854388.1 glycine betaine ABC transporter substrate-binding protein -
  FOC63_RS10725 (FOC63_10725) - 2142295..2142930 (-) 636 WP_009854389.1 ABC transporter permease -
  FOC63_RS10730 (FOC63_10730) - 2142920..2143372 (-) 453 WP_009854390.1 MarR family winged helix-turn-helix transcriptional regulator -
  FOC63_RS10735 (FOC63_10735) - 2143362..2144339 (-) 978 WP_009854391.1 zinc-binding dehydrogenase -
  FOC63_RS10740 (FOC63_10740) rcrQ 2144608..2146380 (-) 1773 WP_009854392.1 ABC transporter ATP-binding protein Regulator
  FOC63_RS10745 (FOC63_10745) rcrP 2146370..2148184 (-) 1815 WP_009854393.1 ABC transporter ATP-binding protein Regulator
  FOC63_RS10750 (FOC63_10750) rcrR 2148188..2148628 (-) 441 WP_012962070.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FOC63_RS10755 (FOC63_10755) - 2148803..2149213 (-) 411 WP_009854395.1 peptide deformylase -
  FOC63_RS10760 (FOC63_10760) - 2149210..2149719 (-) 510 WP_009854396.1 GNAT family N-acetyltransferase -
  FOC63_RS10765 (FOC63_10765) gdhA 2149986..2151335 (-) 1350 WP_009854398.1 NADP-specific glutamate dehydrogenase -
  FOC63_RS10770 (FOC63_10770) - 2151582..2152079 (+) 498 WP_009854399.1 DUF308 domain-containing protein -
  FOC63_RS10775 (FOC63_10775) queF 2152136..2152627 (-) 492 WP_009854400.1 preQ(1) synthase -
  FOC63_RS10780 (FOC63_10780) queE 2152640..2153353 (-) 714 WP_009854401.1 7-carboxy-7-deazaguanine synthase QueE -
  FOC63_RS10785 (FOC63_10785) queD 2153346..2153792 (-) 447 WP_009854402.1 6-carboxytetrahydropterin synthase QueD -
  FOC63_RS10790 (FOC63_10790) queC 2153798..2154445 (-) 648 WP_043878574.1 7-cyano-7-deazaguanine synthase QueC -
  FOC63_RS10795 (FOC63_10795) - 2154686..2156455 (-) 1770 WP_009854404.1 ABC transporter ATP-binding protein -
  FOC63_RS10800 (FOC63_10800) - 2156458..2158197 (-) 1740 WP_043878575.1 ABC transporter ATP-binding protein -
  FOC63_RS10805 (FOC63_10805) - 2158275..2160146 (-) 1872 WP_009854406.1 ABC-F family ATP-binding cassette domain-containing protein -
  FOC63_RS10810 (FOC63_10810) - 2160143..2161348 (-) 1206 WP_009854407.1 CCA tRNA nucleotidyltransferase -
  FOC63_RS10815 (FOC63_10815) dapB 2161345..2162112 (-) 768 WP_009854408.1 4-hydroxy-tetrahydrodipicolinate reductase -
  FOC63_RS10820 (FOC63_10820) - 2162132..2162980 (-) 849 WP_009854409.1 DegV family protein -
  FOC63_RS10825 (FOC63_10825) - 2162980..2163360 (-) 381 WP_009854410.1 DUF1149 family protein -
  FOC63_RS10830 (FOC63_10830) - 2163489..2164262 (-) 774 WP_009854411.1 TMEM175 family protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65251.34 Da        Isoelectric Point: 5.1292

>NTDB_id=450175 FOC63_RS10740 WP_009854392.1 2144608..2146380(-) (rcrQ) [Streptococcus gallolyticus strain FDAARGOS_755]
MENKKKTSFYGRMKPYIKGFQLPFLLAVIGAIVSATVTVIGPDKLKEITNTITKGLTPTATGMIPGIDLDKVGEIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKIDKVPLNYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAAGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAVKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVAFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGRITIDGVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=450175 FOC63_RS10740 WP_009854392.1 2144608..2146380(-) (rcrQ) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGGAAAATAAGAAAAAAACATCTTTCTATGGCAGAATGAAGCCCTACATTAAAGGTTTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGGTTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATACAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTGAAATTGCATTAACTTTGGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACCGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTGACAAGGTTCCATTGAATTACTTTGATAGTCATTCGCAAGGGGACACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTGGTGACATCAACCATGTTA
TTGATTGGTTCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTTTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGCCAACAAAATAACTTGGCTGCGATTAACGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGCTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGGTATGTTATGGTCTGTGTGGTTGGTGCCGTTAAAGTTATCAATGGTGATATTACCATGGGTGACGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCTGCCATGAGTCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGACGAGTCTGACAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTGCCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCAGCTG
TGGCGAAACCTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGTGCTGGTAAAACAACCATTGTTAACCTGCTCATGAAA
TTCTATGAAATCGATAAAGGTCGAATCACTATTGATGGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGATGAACAAGTTATTGCAGCGGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAAGGTTATGACACT
TATCTTGATGATTCTGTAACGCTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTCTGAAAGATTCACC
GCTCCTTATTTTGGACGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATCGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATCATCGAACAAGGCAATCACGATGATTTGATGCAACAAGGCGGCTTCTATGCTGACCTCTACAATTCACAATT
TGAAGTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060RI72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.649

100

0.739