Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   I6H05_RS09610 Genome accession   NZ_CP065604
Coordinates   1975170..1975979 (-) Length   269 a.a.
NCBI ID   WP_005544971.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain FDAARGOS_948     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1970170..1980979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H05_RS09580 (I6H05_09580) aroB 1970446..1971534 (-) 1089 WP_005544982.1 3-dehydroquinate synthase -
  I6H05_RS09585 (I6H05_09585) aroK 1971558..1972085 (-) 528 WP_005555432.1 shikimate kinase AroK -
  I6H05_RS09590 (I6H05_09590) comE 1972299..1973708 (-) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene
  I6H05_RS09595 (I6H05_09595) - 1973728..1974120 (-) 393 WP_005544975.1 hypothetical protein -
  I6H05_RS09600 (I6H05_09600) - 1974120..1974644 (-) 525 WP_005543969.1 hypothetical protein -
  I6H05_RS09605 (I6H05_09605) - 1974641..1975159 (-) 519 WP_025298239.1 PilN domain-containing protein -
  I6H05_RS09610 (I6H05_09610) comA 1975170..1975979 (-) 810 WP_005544971.1 hypothetical protein Machinery gene
  I6H05_RS09615 (I6H05_09615) - 1976113..1978680 (+) 2568 WP_005566815.1 penicillin-binding protein 1A -
  I6H05_RS09620 (I6H05_09620) - 1978775..1979620 (+) 846 WP_005566814.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31326.94 Da        Isoelectric Point: 6.1096

>NTDB_id=450116 I6H05_RS09610 WP_005544971.1 1975170..1975979(-) (comA) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKLAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLMPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLAVQHKLQQTQTLFQTQGNLTALLAQYCQRYAEEPMQVFYYQTEKDAQAIPQSWHAIETE
LPFIALGNALWQRETPLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=450116 I6H05_RS09610 WP_005544971.1 1975170..1975979(-) (comA) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTAGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGCGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAG
AACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCCGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.541

96.283

0.39
  comA Haemophilus influenzae 86-028NP

40.541

96.283

0.39