Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6H05_RS05690 Genome accession   NZ_CP065604
Coordinates   1209211..1209900 (+) Length   229 a.a.
NCBI ID   WP_005547547.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain FDAARGOS_948     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204211..1214900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H05_RS05665 (I6H05_05665) nanQ 1204490..1204960 (+) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  I6H05_RS05670 (I6H05_05670) ampD 1205434..1205988 (-) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  I6H05_RS05675 (I6H05_05675) pilA 1206110..1206562 (+) 453 WP_005586498.1 pilin Machinery gene
  I6H05_RS05680 (I6H05_05680) pilB 1206589..1207998 (+) 1410 WP_019518272.1 GspE/PulE family protein Machinery gene
  I6H05_RS05685 (I6H05_05685) pilC 1207991..1209214 (+) 1224 WP_025298077.1 type II secretion system F family protein Machinery gene
  I6H05_RS05690 (I6H05_05690) pilD 1209211..1209900 (+) 690 WP_005547547.1 prepilin peptidase Machinery gene
  I6H05_RS05695 (I6H05_05695) coaE 1209950..1210573 (+) 624 WP_005547548.1 dephospho-CoA kinase -
  I6H05_RS05700 (I6H05_05700) yacG 1210563..1210775 (+) 213 WP_005567966.1 DNA gyrase inhibitor YacG -
  I6H05_RS05705 (I6H05_05705) - 1210775..1211047 (+) 273 WP_005547552.1 GNAT family N-acetyltransferase -
  I6H05_RS05710 (I6H05_05710) - 1211444..1212817 (+) 1374 WP_005547554.1 alanine/glycine:cation symporter family protein -
  I6H05_RS05715 (I6H05_05715) raiA 1213045..1213368 (+) 324 WP_005540708.1 ribosome-associated translation inhibitor RaiA -
  I6H05_RS05720 (I6H05_05720) - 1213517..1214071 (+) 555 WP_005540709.1 DUF5358 domain-containing protein -
  I6H05_RS10670 - 1214349..1214511 (-) 163 Protein_1113 phosphoribosylformylglycinamidine synthase subunit PurQ -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26018.72 Da        Isoelectric Point: 8.2297

>NTDB_id=450099 I6H05_RS05690 WP_005547547.1 1209211..1209900(+) (pilD) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
MMWLLFLLGGALCGWRVHRYVEHFADNLSREVHAAYTEIYPQNPPHFTAEKSILKPLKRHFSAPLYSLLFTLLFIICYAI
NEPLQALCFALYGALLIAISLVDWHYRLISPALCQALFTLGLGAAYWQIGTLTLEQSLQSAVVFFGVFYAIYHAAKWYYR
QEALGRGDYWLALGLGVFLPAHQFPVFLFLACFFGLLYAAYAKYQHRTLNAVPFGPFMSLAGVVCLLLN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=450099 I6H05_RS05690 WP_005547547.1 1209211..1209900(+) (pilD) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
ATGATGTGGCTACTTTTTTTGCTTGGTGGCGCACTATGCGGGTGGCGTGTTCATCGTTATGTAGAACATTTCGCCGATAA
CCTCAGCCGCGAGGTTCATGCCGCCTACACGGAAATTTACCCGCAAAACCCACCGCACTTTACAGCGGAAAAGTCGATTC
TGAAACCGCTTAAACGGCATTTTTCCGCGCCCCTTTACAGCCTTTTATTCACCTTGCTGTTCATTATTTGTTATGCCATC
AATGAACCGTTACAAGCCCTATGCTTTGCCCTTTATGGCGCCTTATTAATTGCCATTTCCCTAGTGGATTGGCACTATCG
CTTGATTTCACCCGCCTTATGCCAAGCCTTGTTTACCCTCGGTTTAGGCGCGGCATACTGGCAAATCGGCACATTAACAT
TGGAGCAAAGCCTGCAAAGTGCGGTTGTTTTTTTCGGTGTTTTTTATGCCATCTACCACGCCGCAAAATGGTACTACCGA
CAAGAAGCTCTCGGACGCGGCGATTATTGGTTGGCACTGGGCTTAGGCGTTTTTCTCCCGGCACACCAATTTCCTGTTTT
TTTATTCCTCGCCTGCTTTTTCGGCTTACTTTATGCTGCCTACGCCAAATACCAACATCGCACACTCAACGCCGTGCCTT
TCGGTCCCTTTATGTCCCTAGCCGGCGTGGTCTGTTTATTGCTTAATTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.301

100

0.393
  pilD Haemophilus influenzae Rd KW20

38.839

97.817

0.38