Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC68_RS06115 Genome accession   NZ_CP054006
Coordinates   1191528..1191923 (-) Length   131 a.a.
NCBI ID   WP_002448700.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_762     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1186528..1196923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC68_RS06090 (FOC68_06095) thiE 1187061..1187699 (-) 639 WP_002448695.1 thiamine phosphate synthase -
  FOC68_RS06095 (FOC68_06100) thiM 1187702..1188490 (-) 789 WP_002448660.1 hydroxyethylthiazole kinase -
  FOC68_RS06100 (FOC68_06105) thiD 1188483..1189304 (-) 822 WP_002448656.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FOC68_RS06105 (FOC68_06110) tenA 1189297..1189986 (-) 690 WP_002448649.1 thiaminase II -
  FOC68_RS06110 (FOC68_06115) - 1190377..1191123 (-) 747 WP_002448645.1 transglycosylase family protein -
  FOC68_RS06115 (FOC68_06120) ssb 1191528..1191923 (-) 396 WP_002448700.1 single-stranded DNA-binding protein Machinery gene
  FOC68_RS06120 (FOC68_06125) - 1192117..1192557 (+) 441 WP_002448687.1 YwpF-like family protein -
  FOC68_RS06125 (FOC68_06130) fabZ 1192607..1193044 (-) 438 WP_002448673.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FOC68_RS06130 (FOC68_06135) murA 1193072..1194337 (-) 1266 WP_002448704.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FOC68_RS06135 (FOC68_06140) - 1194444..1194674 (-) 231 WP_002448711.1 DUF1146 family protein -
  FOC68_RS06140 (FOC68_06145) - 1194983..1195384 (-) 402 WP_002448708.1 F0F1 ATP synthase subunit epsilon -
  FOC68_RS06145 (FOC68_06150) atpD 1195406..1196818 (-) 1413 WP_002448706.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15163.35 Da        Isoelectric Point: 7.1326

>NTDB_id=450080 FOC68_RS06115 WP_002448700.1 1191528..1191923(-) (ssb) [Staphylococcus hominis strain FDAARGOS_762]
MLNKIVIVGRMTKDAKIYNNEEVKIATFSVATERNYKDENDEIACDYILCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDNSLNTDTYPFDHLELMNIK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=450080 FOC68_RS06115 WP_002448700.1 1191528..1191923(-) (ssb) [Staphylococcus hominis strain FDAARGOS_762]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATAATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGACTATATATTGTGTAAAGCATTTG
GTAAGATGGCCAGTAACATTGAAAAATATACTTCTCAAGGATCATTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTAACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAACTCACTAAATACAGACACTTATCCATTTGATCATCTCGAATTAATGAATATAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725