Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FOC71_RS06180 Genome accession   NZ_CP053999
Coordinates   1221446..1222678 (+) Length   410 a.a.
NCBI ID   WP_003072918.1    Uniprot ID   A0A1L7MUF6
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216446..1227678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS06150 (FOC71_06150) - 1217120..1217962 (+) 843 WP_003072927.1 hypothetical protein -
  FOC71_RS06155 (FOC71_06155) - 1218001..1218264 (+) 264 WP_003024913.1 chorismate mutase -
  FOC71_RS06160 (FOC71_06160) - 1218280..1219497 (+) 1218 WP_003072925.1 voltage-gated chloride channel family protein -
  FOC71_RS06165 (FOC71_06165) - 1219583..1220422 (+) 840 WP_003072923.1 thymidylate synthase -
  FOC71_RS06170 (FOC71_06170) - 1220707..1221219 (+) 513 WP_003072921.1 dihydrofolate reductase -
  FOC71_RS06175 (FOC71_06175) - 1221219..1221392 (+) 174 WP_003024903.1 hypothetical protein -
  FOC71_RS06180 (FOC71_06180) clpX 1221446..1222678 (+) 1233 WP_003072918.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FOC71_RS06185 (FOC71_06185) yihA 1222691..1223278 (+) 588 WP_003072916.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FOC71_RS06190 (FOC71_06190) - 1223401..1224108 (+) 708 WP_003072914.1 glucosaminidase domain-containing protein -
  FOC71_RS06195 (FOC71_06195) - 1224284..1225081 (+) 798 WP_003072913.1 formate/nitrite transporter family protein -
  FOC71_RS06200 (FOC71_06200) - 1225299..1227044 (+) 1746 WP_003072911.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45705.19 Da        Isoelectric Point: 4.3968

>NTDB_id=450022 FOC71_RS06180 WP_003072918.1 1221446..1222678(+) (clpX) [Streptococcus intermedius strain FDAARGOS_769]
MPTNRTSEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEDDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVEDLVR
ILREPKNALVKQYQTLLSYDDVTLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDIMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=450022 FOC71_RS06180 WP_003072918.1 1221446..1222678(+) (clpX) [Streptococcus intermedius strain FDAARGOS_769]
ATGCCTACAAATCGTACGAGCGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGTCAAGAAGAAGTTCAAAAAATTAT
TGCAGGAAATAATGCATTTATTTGTAACGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TCTTGGCAGACTTGTCGGAAGTACCAAAACCACAAGAATTGCTTAACATTTTAAATCACTATGTAATAGGGCAAGATCGT
GCAAAGCGAGCGCTGGCTGTTGCTGTATACAATCACTATAAACGTATCAATTTTCACGATAATCGTGAAGAAGAGGATGA
TGTCGAATTACAAAAATCCAATATTCTTATGATTGGTCCAACCGGTTCTGGTAAGACTTTTCTTGCTCAAACTTTAGCGA
AAAGTCTAAATGTTCCCTTTGCGATTGCAGATGCAACGGCTTTGACAGAAGCTGGATATGTCGGAGAAGATGTTGAAAAC
ATTCTCTTAAAACTCTTGCAAGCTGCAGATTTTAATATTGAGCGTGCAGAACGTGGCATTATCTATGTAGATGAGATTGA
CAAAATTGCAAAGAAAAGCGAAAATGTCTCTATTACTCGTGATGTGTCTGGTGAAGGCGTTCAGCAAGCTTTGCTTAAAA
TCATTGAAGGGACTGTAGCTAGTGTACCTCCTCAAGGCGGTCGCAAACATCCACAGCAAGAAATGATTCAAGTGGATACC
AAGAATATTCTTTTTATCGTTGGCGGTGCTTTTGACGGAATTGAAGAAATCGTCAAACAACGTCTAGGTGAAAAGATTAT
TGGTTTTGGTCAAAATAACAAAGCTATTGATGAAAATAGTTCTTATATGCAAGAAATTATTTCCGAAGATATTCAAAAAT
TTGGACTCATCCCCGAATTGATTGGTCGTTTACCAGTGTTTGCTGCGCTTGAGCCTTTGACAGTTGAGGATTTAGTACGA
ATTCTTCGTGAGCCAAAGAACGCCCTAGTAAAACAATATCAAACTCTCCTTTCTTATGATGATGTTACATTAGAGTTTGA
TGATGATGCCCTCCAAGAAATTGCCAATAAGGCTATTGAACGTAAGACAGGTGCTCGTGGATTGCGTTCAATTATTGAAG
AAACTATGATGGATATCATGTTTGAAGTCCCAAGTCAAGAAAATGTGAAATTAGTGCGGATTACCAAGGAAGCAGTTGAT
GGAACAGATAAACCGATTTTAGAAACAGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7MUF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.706

98.049

0.576