Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC73_RS04105 Genome accession   NZ_CP053998
Coordinates   887477..887995 (-) Length   172 a.a.
NCBI ID   WP_002884367.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 882477..892995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS04085 (FOC73_04085) - 884391..885335 (+) 945 WP_002884446.1 magnesium transporter CorA family protein -
  FOC73_RS04090 (FOC73_04090) - 885405..886076 (+) 672 WP_002884401.1 DUF1129 domain-containing protein -
  FOC73_RS04095 (FOC73_04095) - 886193..887074 (+) 882 WP_022495971.1 DUF4300 family protein -
  FOC73_RS04100 (FOC73_04100) rpsR 887196..887435 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  FOC73_RS04105 (FOC73_04105) ssb 887477..887995 (-) 519 WP_002884367.1 single-stranded DNA-binding protein Machinery gene
  FOC73_RS04110 (FOC73_04110) rpsF 888007..888297 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  FOC73_RS04115 (FOC73_04115) - 888518..889471 (+) 954 WP_002884801.1 hypothetical protein -
  FOC73_RS04120 (FOC73_04120) mutY 890639..891790 (+) 1152 WP_002884244.1 A/G-specific adenine glycosylase -
  FOC73_RS04125 (FOC73_04125) - 892088..892348 (-) 261 WP_002884687.1 hypothetical protein -
  FOC73_RS09770 - 892369..892770 (-) 402 WP_004183523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18624.35 Da        Isoelectric Point: 4.9163

>NTDB_id=449935 FOC73_RS04105 WP_002884367.1 887477..887995(-) (ssb) [Streptococcus salivarius strain FDAARGOS_771]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPTQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=449935 FOC73_RS04105 WP_002884367.1 887477..887995(-) (ssb) [Streptococcus salivarius strain FDAARGOS_771]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCAGTTGC
TACATTCAGTCTTGCAGTTAATCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAGCCTACGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AACCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587