Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOC77_RS23530 Genome accession   NZ_CP053989
Coordinates   4796506..4798269 (-) Length   587 a.a.
NCBI ID   WP_235844512.1    Uniprot ID   -
Organism   Niallia circulans strain FDAARGOS_783     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4791506..4803269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS23500 (FOC77_23500) - 4792029..4792451 (-) 423 WP_047942594.1 HIT family protein -
  FOC77_RS23505 (FOC77_23505) - 4792462..4792878 (-) 417 WP_156485437.1 DUF4304 domain-containing protein -
  FOC77_RS23510 (FOC77_23510) - 4793032..4794195 (+) 1164 WP_061799541.1 MFS transporter -
  FOC77_RS23515 (FOC77_23515) - 4794216..4795076 (+) 861 WP_061799543.1 MerR family transcriptional regulator -
  FOC77_RS23520 (FOC77_23520) - 4795374..4795778 (+) 405 WP_061799545.1 VOC family protein -
  FOC77_RS23525 (FOC77_23525) - 4795925..4796428 (-) 504 WP_047942600.1 MarR family transcriptional regulator -
  FOC77_RS23530 (FOC77_23530) rcrQ 4796506..4798269 (-) 1764 WP_235844512.1 ABC transporter ATP-binding protein Regulator
  FOC77_RS23535 (FOC77_23535) rcrP 4798340..4800097 (-) 1758 WP_061799548.1 ABC transporter ATP-binding protein Regulator
  FOC77_RS23540 (FOC77_23540) - 4800252..4800809 (-) 558 WP_061799550.1 thioredoxin family protein -
  FOC77_RS23545 (FOC77_23545) - 4800975..4802039 (+) 1065 WP_061799553.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65159.68 Da        Isoelectric Point: 5.3584

>NTDB_id=449812 FOC77_RS23530 WP_235844512.1 4796506..4798269(-) (rcrQ) [Niallia circulans strain FDAARGOS_783]
MPPRAKGMNFSSLKQLVIYCKAYFPIIIFALILAMTAAIFSIIGPDQLSKMTDYITAGLMGEIDLGAVYNVAILLVFLYG
LGFIFNYVQGYIMATVTQRISKQLRRDISVKINRLPLKYFDNTTTGDVLSRVTNDVDMVGQTMNQSISSLITAITMFVGS
LIMMFYTNWIMAIAAILSTFIGFAFMFFIISKSQKYFAQQQQELGKLNGHIEEIYSGHNVVKAYNAEQQAKDDFFAINTR
LYESAWKSQFMSGLMMPLMMFIGNFGYVVVCIVGAALAVNGHISFGVIVAFMLYIRLFTQPLQQIAQAATNLQSTAAASG
RVFEFLSEEELAAEEEKTAKLANIKGDVEFKHVRFGYSEEKTIIEDFSVQVAAGQKVAIVGPTGAGKTTLINLLMRFYEI
NGGEITIDGIPTNQMTREALHDLFCMVLQDTWIFEGSIRDNIVYSREGVSDEEVEAACKAVGLHHFIKTLPNGYDTILDD
KTSLSAGQKQLITIARAMVKMAPLLILDEATSSVDTRTELLIQTAMDKLTEGKTSFVIAHRLSTIKNADLILVMKDGDII
EAGTHKELIAKNGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=449812 FOC77_RS23530 WP_235844512.1 4796506..4798269(-) (rcrQ) [Niallia circulans strain FDAARGOS_783]
ATTCCTCCGCGTGCAAAAGGGATGAATTTTTCCAGTTTAAAGCAGCTGGTCATTTACTGTAAGGCTTATTTTCCGATTAT
CATCTTTGCTTTAATTCTTGCGATGACAGCGGCAATCTTTAGCATTATCGGTCCTGATCAGCTAAGCAAAATGACGGATT
ATATTACAGCAGGACTGATGGGGGAAATTGATCTAGGCGCTGTATATAATGTAGCGATTCTGTTGGTTTTCCTATATGGT
TTAGGTTTTATTTTTAACTATGTGCAAGGCTATATTATGGCAACTGTTACCCAGAGAATTTCGAAACAATTAAGAAGAGA
CATTTCGGTAAAAATTAACCGTCTGCCTTTAAAATATTTTGATAATACAACAACTGGTGATGTCCTTAGCCGGGTTACAA
ATGATGTCGATATGGTTGGACAGACGATGAACCAAAGTATTAGCAGCTTAATTACTGCTATTACTATGTTCGTCGGTTCC
TTAATCATGATGTTCTATACAAACTGGATTATGGCGATTGCAGCGATTCTTTCTACCTTTATTGGTTTTGCGTTTATGTT
CTTTATTATTTCGAAATCACAGAAATACTTCGCTCAACAGCAGCAAGAGCTTGGAAAACTAAATGGTCATATTGAAGAAA
TCTATTCTGGCCATAATGTCGTGAAAGCTTACAATGCTGAACAGCAGGCGAAGGACGATTTTTTTGCTATTAACACACGA
CTATATGAGAGTGCGTGGAAATCGCAATTTATGTCAGGGCTGATGATGCCGTTAATGATGTTTATTGGAAACTTTGGTTA
TGTGGTTGTATGTATTGTCGGGGCGGCTCTTGCCGTAAATGGCCATATTTCATTTGGTGTTATTGTTGCCTTTATGCTGT
ATATTCGCTTATTCACACAGCCGCTGCAACAAATTGCGCAAGCAGCAACAAATCTGCAGTCCACAGCAGCAGCAAGTGGG
CGTGTTTTTGAGTTCTTGTCCGAGGAAGAACTAGCAGCAGAAGAGGAGAAAACAGCAAAATTGGCAAATATCAAAGGCGA
TGTGGAATTTAAGCATGTCCGTTTTGGCTACAGCGAAGAAAAAACGATTATTGAAGACTTTTCCGTACAAGTAGCCGCTG
GTCAGAAGGTCGCAATCGTAGGCCCGACTGGCGCTGGAAAAACAACATTAATTAATTTGCTCATGCGCTTCTATGAAATA
AATGGCGGCGAGATAACGATTGACGGGATTCCAACCAACCAAATGACAAGAGAGGCCCTGCATGATCTTTTCTGTATGGT
GCTGCAAGATACATGGATATTTGAAGGTTCTATCCGCGACAATATCGTCTATTCAAGAGAAGGAGTATCGGATGAAGAAG
TAGAAGCTGCCTGCAAAGCAGTTGGCTTGCATCATTTTATCAAAACATTGCCAAACGGCTATGATACTATCTTGGATGAC
AAAACAAGTTTATCAGCAGGTCAAAAACAGCTTATCACCATCGCACGTGCCATGGTAAAAATGGCGCCATTACTTATCCT
AGATGAAGCGACTAGCTCCGTGGATACCCGTACGGAATTACTGATCCAAACAGCAATGGATAAGCTGACAGAAGGAAAAA
CTTCCTTTGTGATCGCCCATAGACTTTCTACAATTAAAAATGCCGATTTAATACTTGTCATGAAAGACGGCGATATTATT
GAAGCCGGAACACATAAAGAATTAATCGCGAAAAATGGATTTTACGCTGAGCTTTATAATAGCCAGTTTGAAGAAGCATC
GTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-302)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.609

97.956

0.574