Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   STCNRZ1202_RS07900 Genome accession   NZ_CP065506
Coordinates   1521428..1524748 (-) Length   1106 a.a.
NCBI ID   WP_347229610.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1516428..1529748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1202_RS07890 (STCNRZ1202_07900) - 1516658..1517391 (+) 734 Protein_1500 DUF554 domain-containing protein -
  STCNRZ1202_RS07895 (STCNRZ1202_07905) rexA 1517785..1521438 (-) 3654 WP_347229609.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  STCNRZ1202_RS07900 (STCNRZ1202_07910) rexB 1521428..1524748 (-) 3321 WP_347229610.1 ATP-dependent nuclease subunit B Machinery gene
  STCNRZ1202_RS07905 (STCNRZ1202_07915) - 1525238..1525889 (-) 652 Protein_1503 hypothetical protein -
  STCNRZ1202_RS07910 (STCNRZ1202_07920) - 1525939..1526374 (-) 436 Protein_1504 LytTR family DNA-binding domain-containing protein -
  STCNRZ1202_RS07915 (STCNRZ1202_07925) - 1526592..1527212 (-) 621 WP_059257385.1 hypothetical protein -
  STCNRZ1202_RS07920 (STCNRZ1202_07930) - 1527489..1527629 (-) 141 WP_172838683.1 hypothetical protein -
  STCNRZ1202_RS07925 (STCNRZ1202_07935) - 1527674..1528697 (-) 1024 Protein_1507 DUF6574 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126721.47 Da        Isoelectric Point: 5.0325

>NTDB_id=449812 STCNRZ1202_RS07900 WP_347229610.1 1521428..1524748(-) (rexB) [Streptococcus thermophilus strain CNRZ1202]
MKLLYTDMSQDLTEILTEQASSYAQKGKRVFYIAPSALSFEKERKVLEYLPQSASFDITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLLHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVVGTYTSQKAYKANFVYGNVYQAS
VDFLRTLAQTYKVIPDYVTTDKEGNLSFARISRLLESRHDFSTVDETVTEQDKHALKVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHPLVEFVDSLEHIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAVQLPSQM
VELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDD
MSVYLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVAVRYLRKRLDKDQVLIPK
VIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYFLRYVLELEELESIHPDARHHGTYLHRVFERVMGDSSS
ESFDDKLEKAIAQTNQEQPFEILYTEDQESRFSRQILEDIARSTASVLRDNAAVKVEREEVKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKTGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQVPQLNLAQIGLEKLAAQAHK
ELTYKGLFVASETEHLTGGNYDLQKTVTYDKEDLETLLDYNIKLFRSAAEVIRSGNFAINPYTEDGKSVQGDQIKSITHF
EADRHMGQARKLLRLPKKGKKEAYLELMAKTEEENQMQVSENTISFPVIDHAVRVDKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=449812 STCNRZ1202_RS07900 WP_347229610.1 1521428..1524748(-) (rexB) [Streptococcus thermophilus strain CNRZ1202]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCGTCTAGCTATGCTCAAAAGGG
AAAGAGGGTTTTTTATATTGCTCCTAGTGCCCTGTCCTTTGAAAAGGAGCGAAAGGTTTTAGAATACCTGCCTCAGTCAG
CATCTTTTGACATTACGGTGACTCGTTTTACTCAGATGGCTAGGTATTTTATTCTCAATACGAGTAACCCAAAGACTCAG
TTGGATGATACAGGTTTGGCCATGATTTTTTATAAAGTGTTGTTGCACATGGGCGATGATGAGCTCAAGGTCTATGGCCG
TTTGCGTAAGGATAGCAACTTTATTAATCAATTAGTGGACCTTTATAAAGAGTTGCAGCAGGCCAATATGACAGTATTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGGTAAGGATTTTCAGTGCAGCTCAGGACCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAGCTTAGTGCCTTCTTTAAGGAAATTACCTCAGGGCATCTGGATGAGGCCTTGAGTAA
CACAGTTTTGGTCATTGATGGTTTTACCCGTTTCTCGGCTGAGGAGGAGGCTCTGGTTGCACTCTTGAACGACAAGTGCC
ACCAGATTGTAGTGGGGACCTATACTAGTCAAAAAGCTTATAAGGCCAATTTTGTTTATGGCAATGTTTATCAAGCCTCA
GTGGATTTCTTGAGGACTTTGGCTCAGACCTATAAGGTGATACCCGACTACGTGACGACAGACAAGGAGGGCAATCTTTC
TTTTGCGCGTATTAGTCGTCTTTTGGAGAGCCGTCATGACTTTAGTACGGTAGATGAGACGGTAACTGAGCAGGATAAGC
ATGCCCTGAAGGTTTGGGAAGTGGTCAACCAGAAAGAAGAAGTGGCCCAGGTTGCCAAGAGTATTCGCCAGTTGCTGGCA
GATGGCAAGCGTTACAAGGATATTTTGGTCTTGCTTGGTGACGAGGAGAGTTATAAGCTTCACGTGGGGCAGATTTTCCG
AAAATTTGATATTCCTTATTATTTCGGTAAGGAAGAAAGCATGTCTAGCCATCCTTTGGTGGAGTTTGTGGATTCGCTAG
AGCATATCAAGCGCTATAACTACCGTGCTGAGGATTTACTTAACCTTGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGATTTAGACCTTTTTGAGTATTATGTCAATTTTGCGGATATCAAGGGGCGTCATAAATTCTTGTCTGATTTTACAGC
TAATAGTCGTGATAAGTATAATTTAGACCAGATCAATGCCTTGCGGTCACAATTGATAGAGCCCTTGGACAAGTTTCTTA
ATAGTCGCAAACAAAAGGGATCTAGTCTACTCAAGAAACTGGTGGTCTTTTTAGAGGCTGTGCAACTGCCAAGTCAGATG
GTTGAATTGTCCACCAAGGCCAGTGAAGCTGAAAAAGAACAGAATGAACAGGTTTGGAAGGCTTTCACTCATATCTTGGA
GCAGGTTGAGACTATCTTTGGAGACGAATCGCTCTCAGTGGACGACTTTTTGTCTATCTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTGTTGATGTGGTCAATGTGAAAAAATACGACTTAATACAGCCACATTCGGCTCCG
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCTAAGGTAGGACAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCACAGGAGATTGGATATTGTTACGCAGATCAATAGTAAGCGAGGTCATTTTG
TGGCTATGTCGCTTTTCAATGCTGCTAGTGAACAATTAGTGCTTAGTCAGCCACAAATTATAAATGAAAGTCAAGATGAC
ATGTCGGTTTATTTGAAGGAGCTTCTTGACCTTGGTATTCCATTGGTGGAAAAGGGACGCAATCGTTTCGAAGCAAAGGG
GGACCAGATTGGGAACTATAGAGACCTTCTGTCGACTGTCATTGCCCTTAACAGTAGTCATTTGGATCTTGACTTGGACA
AAGAAACCCAGACTTTCTGGTCGGTTGCTGTACGCTATCTCCGTAAGCGACTTGATAAGGATCAAGTCTTGATTCCAAAG
GTGATTGACGATGTGACGACAACCAAGGTGGACGATCAGGTCATGCAGTTGGTCTTTCCGGAGGAAGAACCACTGAAATT
ATCAGCTACAGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGAACTTGAGGAGCTAG
AGTCTATCCATCCGGATGCTCGACACCACGGGACTTATTTACACCGAGTCTTTGAGCGTGTGATGGGTGATTCGTCATCA
GAAAGCTTCGATGATAAATTGGAAAAGGCCATTGCTCAGACCAATCAGGAACAACCTTTTGAAATTCTCTATACCGAGGA
CCAAGAGAGTCGTTTCTCTCGTCAGATTTTGGAGGACATTGCGCGTTCAACTGCAAGTGTTCTACGTGACAATGCGGCGG
TTAAGGTTGAGCGTGAGGAAGTCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACTGGGATTATTGACCGAGTG
GACCGTTTAACAGATGGTGCTCTGGGTGTTGTTGACTATAAAACAGGTAAAAATGTCTTTGATATTCAGAAATTCTACAA
TGGCCTCAGTCCGCAATTGGTGACCTATCTGGAGGCTCTCCGTCAAACCTATAAGGTTGATGCTGATCAACTTTTTGGGG
CTATGTATCTTCACATGCAGGTCCCACAGCTTAACCTAGCTCAGATTGGTTTGGAAAAGCTAGCGGCTCAGGCTCATAAG
GAATTGACTTATAAGGGACTTTTTGTGGCTTCAGAAACGGAGCATTTGACTGGTGGAAACTATGATCTGCAAAAGACTGT
CACCTATGACAAGGAGGATTTAGAAACCTTGTTGGACTACAATATTAAGCTCTTTAGGAGTGCTGCTGAAGTTATTCGAA
GTGGGAATTTTGCGATCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGTCTATTACTCACTTC
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCCAAAAAGGGCAAGAAGGAAGCCTATTTGGAGTT
GATGGCAAAAACTGAGGAAGAGAATCAGATGCAAGTTTCTGAAAATACTATCTCCTTTCCAGTCATTGATCATGCTGTGA
GAGTAGACAAAAAAGACCAGGAGGATAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.199

98.373

0.425