Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   STCNRZ1202_RS05965 Genome accession   NZ_CP065506
Coordinates   1134676..1136463 (-) Length   595 a.a.
NCBI ID   WP_096811536.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1129676..1141463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1202_RS05945 (STCNRZ1202_05980) - 1130623..1131263 (-) 641 Protein_1115 DNA alkylation repair protein -
  STCNRZ1202_RS05950 (STCNRZ1202_05985) - 1131455..1131967 (-) 513 WP_002951148.1 GNAT family N-acetyltransferase -
  STCNRZ1202_RS05955 (STCNRZ1202_05990) - 1132126..1132953 (+) 828 Protein_1117 transposase -
  STCNRZ1202_RS05960 (STCNRZ1202_05995) cls 1133037..1134587 (-) 1551 WP_347229808.1 cardiolipin synthase -
  STCNRZ1202_RS05965 (STCNRZ1202_06000) uvrC 1134676..1136463 (-) 1788 WP_096811536.1 excinuclease ABC subunit UvrC Machinery gene
  STCNRZ1202_RS05970 (STCNRZ1202_06005) - 1136523..1137218 (-) 696 WP_347229558.1 YjjG family noncanonical pyrimidine nucleotidase -
  STCNRZ1202_RS05975 (STCNRZ1202_06010) sdaAB 1137496..1138167 (+) 672 WP_041827062.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  STCNRZ1202_RS05980 (STCNRZ1202_06015) sdaAA 1138180..1139049 (+) 870 WP_011227341.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  STCNRZ1202_RS05985 - 1139233..1139465 (+) 233 Protein_1123 IS30 family transposase -
  STCNRZ1202_RS05990 (STCNRZ1202_06020) - 1139772..1140341 (-) 570 WP_180477240.1 hypothetical protein -
  STCNRZ1202_RS05995 (STCNRZ1202_06025) - 1140484..1141268 (-) 785 Protein_1125 ABC transporter permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 68587.94 Da        Isoelectric Point: 9.3940

>NTDB_id=449784 STCNRZ1202_RS05965 WP_096811536.1 1134676..1136463(-) (uvrC) [Streptococcus thermophilus strain CNRZ1202]
MNDLIKHKLELLPNSPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDTKTELLVSEIADFEFIVTESNIEALLLEIN
LIQENMPKFNIRLKDDKSYPFIKITKELYPRLLITRQVKKDGGLYFGPYPDAGAANEIKKLLDRIFPFKKCKNPANKVCF
YYHIGQCNAHTICHTTEGYWQGLVEDVKNFLNGHDDKIVNQLKSKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQ
DMQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHLKPKEIFIPGDIDQESVEAL
VGDEVKVFKPQRGEKKQLVNLATKNARVSLTQKFDLLEKDIAKTQGAIENLGKLMGIPTPVRIESFDNSNIMGTSPVSAM
VVFENGKPNKKEYRKYKIKTVEGPDDYASMREVIRRRYSRVKRDGLTPPDLIIMDGGQGQVNVAKDVLRNELNLSIPVAG
LQKNDKHQTNELLFGDPLRVIDLPRQSEEFFLLHRIQDEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKNFK
SMTAIQQASVEDIQALGIPEKVAQALLDKLSQDSH

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=449784 STCNRZ1202_RS05965 WP_096811536.1 1134676..1136463(-) (uvrC) [Streptococcus thermophilus strain CNRZ1202]
ATGAACGATCTGATTAAACATAAGTTGGAACTGCTCCCAAACAGCCCGGGATGTTATCTCCATAAGGACAAATTTGGCAA
TATTATCTATGTCGGTAAGGCTAAAAATCTAAAAAATCGTGTGCGTAGCTATTTTCGTGGAAGTCATGATACCAAGACGG
AGCTTCTGGTATCCGAGATTGCAGACTTTGAATTTATCGTTACCGAGTCTAATATCGAGGCCTTGCTTTTGGAAATTAAC
CTCATCCAAGAGAATATGCCCAAATTCAACATCCGCCTCAAGGATGACAAGTCTTATCCATTTATCAAGATTACTAAGGA
ACTCTATCCAAGGCTCTTGATTACCCGCCAGGTTAAGAAGGATGGTGGTCTCTATTTTGGTCCATACCCAGATGCTGGTG
CAGCCAATGAAATCAAGAAGCTGTTGGACCGTATTTTCCCCTTTAAGAAATGTAAAAATCCTGCCAACAAGGTCTGTTTC
TATTACCATATTGGCCAATGTAATGCCCACACCATCTGTCACACCACTGAGGGCTATTGGCAAGGTTTGGTTGAGGATGT
CAAGAATTTTCTAAACGGTCATGATGATAAAATCGTTAACCAGCTTAAGTCCAAGATGAAGGACATGTCTGATCAGATGG
AGTTTGAGCGGGCAGCAGAATATCGAGATCTGATTGAGGCAGTGTCGACGCTCAGGACCAAACAAAGGGTTATCCGTCAA
GATATGCAGGACCGCGATATTTTCGGCTACTACGTGGACAAGGGCTGGATGTGTGTTCAGGTTTTCTTTGTCCGCCAAGG
GAAACTCATCCAGCGTGATGTCAATATGTTCCCTTACTATAATGATGCTGAGGAAGATTTTCTAACCTATATGGGTCAAT
TTTACTTGGATAGCCGTCATCTCAAGCCTAAGGAGATTTTCATTCCAGGAGATATTGATCAAGAGTCTGTCGAAGCTCTG
GTCGGAGATGAAGTCAAGGTTTTTAAACCGCAAAGAGGCGAGAAAAAGCAGTTGGTTAATCTGGCAACGAAAAATGCTCG
TGTTAGTTTGACCCAAAAATTTGATCTTCTTGAAAAAGATATAGCCAAGACCCAAGGAGCCATTGAAAATCTAGGCAAAC
TCATGGGAATTCCGACACCGGTTCGCATCGAGTCCTTCGATAACTCTAACATCATGGGAACGAGCCCTGTATCTGCCATG
GTCGTTTTTGAGAACGGCAAACCTAATAAAAAAGAGTACCGCAAATACAAGATAAAGACGGTTGAAGGGCCTGACGATTA
TGCCAGCATGCGTGAGGTCATTCGTCGCCGTTATAGTCGTGTCAAACGTGATGGTCTAACCCCACCAGACCTCATTATCA
TGGATGGTGGTCAAGGTCAGGTCAATGTCGCTAAGGACGTGCTTCGTAATGAGCTGAATCTATCTATCCCGGTTGCAGGT
CTTCAGAAAAATGACAAGCACCAAACCAATGAATTGCTCTTTGGAGATCCTTTGCGAGTCATTGATTTGCCACGTCAATC
CGAGGAGTTTTTCCTCCTTCACCGTATTCAGGATGAAGTACACCGCTTTGCCATTACCTTCCATCGACAAGTCCGTAGTA
AGAATAGTTTCAGTTCCAAACTTGATGGCGTGGAGGGGTTGGGACCTAAACGCAAACAAAAACTCCTCAAAAACTTCAAA
TCAATGACAGCTATCCAACAAGCCAGTGTCGAAGACATCCAAGCTCTTGGAATTCCTGAAAAAGTAGCTCAAGCTTTATT
AGATAAGTTGAGCCAAGATAGTCATTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(540-590)

UvrB/uvrC motif (UVR)

(196-229)

GIY-YIG catalytic domain (GIY-YIG)

(17-87)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(375-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.65

99.328

0.761
  uvrC Streptococcus pneumoniae R6

76.311

99.328

0.758
  uvrC Streptococcus pneumoniae D39

76.311

99.328

0.758