Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC79_RS04050 Genome accession   NZ_CP053988
Coordinates   878374..878892 (-) Length   172 a.a.
NCBI ID   WP_035364986.1    Uniprot ID   A0A929MN55
Organism   Abiotrophia defectiva strain FDAARGOS_785     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 873374..883892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC79_RS04025 (FOC79_04025) - 873846..874607 (-) 762 WP_023392591.1 ParA family protein -
  FOC79_RS04030 (FOC79_04030) rsmG 874618..875340 (-) 723 WP_023392590.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  FOC79_RS04035 (FOC79_04035) rplI 875524..875976 (-) 453 WP_023392589.1 50S ribosomal protein L9 -
  FOC79_RS04040 (FOC79_04040) - 875976..877982 (-) 2007 WP_156905309.1 DHH family phosphoesterase -
  FOC79_RS04045 (FOC79_04045) rpsR 878106..878351 (-) 246 WP_023392587.1 30S ribosomal protein S18 -
  FOC79_RS04050 (FOC79_04050) ssb 878374..878892 (-) 519 WP_035364986.1 single-stranded DNA-binding protein Machinery gene
  FOC79_RS04055 (FOC79_04055) rpsF 878929..879228 (-) 300 WP_023392585.1 30S ribosomal protein S6 -
  FOC79_RS04060 (FOC79_04060) - 879617..880348 (-) 732 WP_023392584.1 ABC transporter permease -
  FOC79_RS04065 (FOC79_04065) - 880345..881199 (-) 855 WP_023392583.1 ABC transporter ATP-binding protein -
  FOC79_RS04070 (FOC79_04070) - 881359..882360 (-) 1002 WP_023392582.1 LytTR family DNA-binding domain-containing protein -
  FOC79_RS04075 (FOC79_04075) - 882376..883101 (-) 726 WP_023392581.1 ABC transporter permease -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19049.81 Da        Isoelectric Point: 4.9104

>NTDB_id=449751 FOC79_RS04050 WP_035364986.1 878374..878892(-) (ssb) [Abiotrophia defectiva strain FDAARGOS_785]
MNTVQLVGRLTRDVELRFTSSGTAVGSFTIAVNRNFTNQQGEREADFISCVIWRKAAENLANFTRKGSLIAIDGRLQTRS
YDNQQGQRVYVTEVVVNNFDLLESRSVTEQRPVSSPNTNHQAGAYGAGGGQGYQSQPQMNQNNYNQSFSSSSTSPFMDEG
HPIDISEDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=449751 FOC79_RS04050 WP_035364986.1 878374..878892(-) (ssb) [Abiotrophia defectiva strain FDAARGOS_785]
ATGAATACTGTACAATTAGTCGGACGTTTAACCCGTGATGTTGAATTACGTTTTACCTCATCTGGCACTGCAGTCGGTTC
TTTCACCATTGCGGTTAACCGTAATTTTACTAACCAACAAGGTGAACGTGAAGCAGACTTCATTTCGTGTGTGATTTGGC
GGAAGGCAGCTGAGAACTTGGCTAACTTTACGCGCAAAGGTTCCTTGATTGCTATCGATGGACGTCTTCAAACACGTTCA
TACGATAACCAACAAGGTCAACGAGTATATGTAACCGAAGTGGTTGTTAACAACTTCGACTTGCTAGAATCTCGTTCTGT
GACTGAACAACGCCCTGTCTCTAGTCCAAACACTAATCACCAAGCAGGTGCTTATGGTGCAGGTGGAGGCCAAGGATACC
AATCACAGCCACAAATGAATCAAAATAACTATAATCAATCATTTTCTTCATCAAGTACCTCTCCATTCATGGATGAAGGT
CACCCAATTGATATTTCTGAAGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.599
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.111

100

0.535