Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABK1_RS17500 Genome accession   NC_017162
Coordinates   3643034..3643774 (-) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii 1656-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3638034..3648774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK1_RS17480 (ABK1_3439) aroB 3638576..3639658 (-) 1083 WP_001193991.1 3-dehydroquinate synthase -
  ABK1_RS17485 (ABK1_3440) aroK 3639687..3640256 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABK1_RS17490 (ABK1_3441) pilQ 3640268..3642433 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABK1_RS17495 (ABK1_3442) pilP 3642496..3643023 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABK1_RS17500 (ABK1_3443) pilO 3643034..3643774 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABK1_RS17505 (ABK1_3444) pilN 3643771..3644412 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ABK1_RS17510 (ABK1_3445) pilM 3644412..3645470 (-) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  ABK1_RS17515 (ABK1_3446) ponA 3645632..3648187 (+) 2556 WP_000736665.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=44974 ABK1_RS17500 WP_000076099.1 3643034..3643774(-) (pilO) [Acinetobacter baumannii 1656-2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=44974 ABK1_RS17500 WP_000076099.1 3643034..3643774(-) (pilO) [Acinetobacter baumannii 1656-2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment