Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FOC89_RS19795 Genome accession   NZ_CP053980
Coordinates   3226075..3227901 (+) Length   608 a.a.
NCBI ID   WP_000003394.1    Uniprot ID   A0A0B5NYS6
Organism   Bacillus thuringiensis strain FDAARGOS_795     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3221075..3232901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC89_RS19775 (FOC89_19770) - 3221397..3222071 (-) 675 WP_000362609.1 TerC family protein -
  FOC89_RS19780 (FOC89_19775) mecA 3222398..3223081 (+) 684 WP_000350720.1 adaptor protein MecA Regulator
  FOC89_RS19785 (FOC89_19780) - 3223154..3224698 (+) 1545 WP_000799201.1 cardiolipin synthase -
  FOC89_RS19790 (FOC89_19785) - 3224780..3226024 (+) 1245 WP_000612273.1 competence protein CoiA -
  FOC89_RS19795 (FOC89_19790) pepF 3226075..3227901 (+) 1827 WP_000003394.1 oligoendopeptidase F Regulator
  FOC89_RS19800 (FOC89_19795) - 3228021..3228194 (-) 174 WP_001984995.1 hypothetical protein -
  FOC89_RS19805 (FOC89_19800) - 3228424..3229317 (-) 894 WP_000360640.1 ClpXP adapter SpxH family protein -
  FOC89_RS19810 (FOC89_19805) - 3229317..3229715 (-) 399 WP_000043381.1 hypothetical protein -
  FOC89_RS19815 (FOC89_19810) - 3229896..3230474 (-) 579 WP_000191105.1 CYTH domain-containing protein -
  FOC89_RS19820 (FOC89_19815) - 3230621..3230992 (+) 372 WP_001180009.1 hypothetical protein -
  FOC89_RS19825 (FOC89_19820) - 3231023..3231661 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  FOC89_RS19830 (FOC89_19825) - 3231680..3232477 (+) 798 WP_000673188.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70320.59 Da        Isoelectric Point: 4.6458

>NTDB_id=449635 FOC89_RS19795 WP_000003394.1 3226075..3227901(+) (pepF) [Bacillus thuringiensis strain FDAARGOS_795]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDTEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIVHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=449635 FOC89_RS19795 WP_000003394.1 3226075..3227901(+) (pepF) [Bacillus thuringiensis strain FDAARGOS_795]
ATGTCTGAACAAAATACAGCAAAAACATTACCAGATCGTAACGAGATTGAAGAATCAAGTACGTGGAGATTGGAAGATAT
TTTCCAAACGGATACAGAGTGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTCGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGTTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTAA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAGATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCATTTAAAGCTGTATATGAAACGTATGGAAAATATAAGAATACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAATTTTAATGCGCGCGTTCGTAAATACGACTCTGCACGTCAAGCGGCATTAAGTAA
TAATAATATTCCTGAAGCAGTGTACGATCAACTTATTGAATCTGTAAATGATAATTTACACTTGTTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCGCTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAATCTTTACATGTACTTGGTGATGAGTATGTTGATATTTTAAA
AGAAGCATATGAAAATCGTTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCG
GTGCATAGTTACTACACAAGAAAAACGCAACCGCACGTATACGGTGACTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAGCATATTGTTCATAAGAAAGTACAA
GAGGGACATGCGGTTACGCCAGACATGTTAACAGAGATTTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GCTTTAGTGCAGCGACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTACCCAATTGAAGTGCTGAAAAAAGCTGGGGTAGATATGGCATCTCCAGAACCAGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5NYS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487